New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2923293	36 (0.600)	3 (0.050)	3/248	NT	7.7%	coding (1960/2772 nt)	PP_2563	antibiotic biosynthesis protein
	?	NC_002947	= 2923329	38 (0.670)					coding (1924/2772 nt)	PP_2563	antibiotic biosynthesis protein

AGCAGCAGCGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCTTTGG  >  NC_002947/2923181‑2923475                                                                                                                                                     |                                                                                                                                                   agcagcagcGATTGCCAGTGCAGGCGGGCGAATACGAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAg                                                                                                                                                    <  5:142731/149‑1 (MQ=255)  gcagcagcGATTGCCAGTTCAGCCGGGCGAATACCAGCAGGATCAATGCTCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGg                                                                                                                                                   <  2:221660‑M2/149‑2 (MQ=255)       agcGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgat                                                                                                                                              >  8:125818‑M2/1‑143 (MQ=255)               ccAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGgaga                                                                                                                                      >  7:134334/1‑149 (MQ=255)               ccAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGgaga                                                                                                                                      >  7:31242/1‑149 (MQ=255)                      aGCCGGGCGAATACCAGCTGGATCAATGCACTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGaa                                                                                                                               <  1:233042/149‑1 (MQ=255)                        ccGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACa                                                                                                                             <  2:157526/149‑1 (MQ=255)                            gCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCAc                                                                                                                         <  7:241049/149‑1 (MQ=255)                             cGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCAcc                                                                                                                        <  8:134334/149‑1 (MQ=255)                                   ccAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGt                                                                                                                   <  3:172079/148‑1 (MQ=255)                                   ccAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCCTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGtt                                                                                                                  >  4:160211/1‑149 (MQ=255)                                      gCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCg                                                                                                               >  5:341149/1‑149 (MQ=255)                                                     tGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAg                                                                                                >  2:54329/1‑149 (MQ=255)                                                       tACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAg                                                                                                <  5:375581/147‑1 (MQ=255)                                                          aacaGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCCTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTc                                                                                           <  3:160211/149‑1 (MQ=255)                                                            caGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCg                                                                                          >  1:371847/1‑148 (MQ=255)                                                                    gCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCAccc                                                                                 <  3:45797/149‑1 (MQ=255)                                                                       ccacGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAgg                                                                              >  2:300059/1‑149 (MQ=255)                                                                        cacGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGt                                                                             >  5:291157/1‑149 (MQ=255)                                                                          cGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTgg                                                                           <  3:37208/149‑1 (MQ=255)                                                                                cTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGcc                                                                         <  3:281266/145‑1 (MQ=255)                                                                                cTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGca                                                                         >  4:281266/1‑144 (MQ=255)                                                                                   tCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACcac                                                                   >  5:195474/1‑148 (MQ=255)                                                                                     aGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACaa                                                                 <  6:291157/148‑1 (MQ=255)                                                                                     aGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAAt                                                                >  4:35421/1‑149 (MQ=255)                                                                                      gTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAAt                                                                >  6:91797/1‑148 (MQ=255)                                                                                       tGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAAt                                                                >  8:270636/1‑147 (MQ=255)                                                                                               gcagcGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGatgatg                                                      <  6:195474/149‑1 (MQ=255)                                                                                                       cgtgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCAt                                              >  8:37648/1‑149 (MQ=255)                                                                                                         tgcATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGc                                            <  5:91797/149‑1 (MQ=255)                                                                                                           cATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCgg                                          <  1:221660/149‑1 (MQ=255)                                                                                                            aTCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatgcacgcacgctgctcaggccactgacagccatcgtggtgccaaccctgttgtacagcgcattgatccagctggtattcgcccggctgcactggcaatcgct                                         <  8:240932‑M2/149‑108 (MQ=255)                                                                                                                ccACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatgcacgcacgctgctcaggccactgacagccatcgtggtgccaaccctgttgtacagcgcattgatccagctggtattcgcccggctgcactggcaatcgc                                          >  6:238492‑M2/1‑38 (MQ=255)                                                                                                                ccACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGggcgatgcacgcacgctgctcaggccactgacagccatcgtggtgccaaccctgttgtacagcgcattgatccagctggtattcgcccggctgcactggcaatcgc                                          <  5:238492‑M2/144‑107 (MQ=255)                                                                                                                ccACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATGACCCAGGTGGCCGACCACAATCAGGATTATGGCGAGCATGCGGAt                                        <  5:137406/146‑1 (MQ=255)                                                                                                                ccACGCCCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGCGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCAAACAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGAt                                        >  6:137406/1‑146 (MQ=255)                                                                                                                      gcTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCgg                               <  2:371847/149‑1 (MQ=255)                                                                                                                        ttCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGACCAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCa                             >  7:333931/1‑149 (MQ=255)                                                                                                                            aTGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTc                         >  3:47649/1‑149 (MQ=255)                                                                                                                             tGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTcc                        <  1:300059/149‑1 (MQ=255)                                                                                                                                    gAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTAccc                 >  7:176188/1‑149 (MQ=255)                                                                                                                                      gCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGc               >  5:271847/1‑149 (MQ=255)                                                                                                                                        tGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGc                                                    <  2:313176/110‑1 (MQ=255)                                                                                                                                        tGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAacac                                  <  1:151141/128‑1 (MQ=255)                                                                                                                                                 gcCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCttt    <  8:31242/149‑1 (MQ=255)                                                                                                                                                   cAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCTTTgg  <  1:54329/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AGCAGCAGCGATTGCCAGTGCAGCCGGGCGAATACCAGCTGGATCAATGCGCTGTACAACAGGGTTGGCACCACGATGGCTGTCAGTGGCCTGAGCAGCGTGCGTGCATCGCCACGCGCTTCGATGGCCTTGAGCTGAAAGCGCGCCAGGGCGATGCCGGAGACCAGGAACAGCACCGAGGTTTCGCCGAGTATCGGCCAGTGGTCGAAATCACCCAGGTGGCCGACCACAATCAGGATGATGGCGAGCATGCGGATGAACACCGGCATTTCCATTACCCGCCACGCGCCTTTGG  >  NC_002947/2923181‑2923475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.