New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3050490 | 56 (0.930) | 3 (0.050) | 3/254 | NT | 5.3% | coding (322/1164 nt) | PP_2663 | hypothetical protein |
? | NC_002947 | = 3050517 | 53 (0.910) | coding (349/1164 nt) | PP_2663 | hypothetical protein |
ACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACTTCGGCGG > NC_002947/3050370‑3050665 | aCCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCg < 2:296873‑M2/149‑2 (MQ=255) ggTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCgg > 4:120944/1‑149 (MQ=255) gTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGc < 2:257401/149‑1 (MQ=255) tGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCTGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCa > 3:171479/1‑149 (MQ=255) tGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCa > 1:222539/1‑149 (MQ=255) gAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCAc > 4:110834/1‑149 (MQ=255) aaTCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCt < 8:356049/149‑1 (MQ=255) aTCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACCGGGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCt > 1:103860/1‑149 (MQ=255) tCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGc > 8:343418/1‑149 (MQ=255) caccGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCg > 7:98394/3‑148 (MQ=255) ccGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcag > 4:215759/1‑149 (MQ=255) gCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCgcagca < 1:296873/149‑1 (MQ=255) tACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCt > 1:362363/1‑149 (MQ=255) ggCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGgc < 4:48277/149‑1 (MQ=255) cgggACGGCGGTCGTCTTCGCTCCCC‑GGCACTTTTCGATCGCCCCCGCGGTGATCGATGAAAGGGAGCGCTTCAGCCGGATCGACGCGCAGCAGATGGGCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAgg < 3:228486/146‑1 (MQ=255) cGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAg < 7:305129/148‑1 (MQ=255) cGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAg < 7:299790/148‑1 (MQ=255) tGACGGCGGTCGGCTTCGCTCACC‑GGCACTTTTCGAGCGCCACCGCGTTGATCGATGAAATGGAGCGTTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGGCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGc < 6:284030/149‑1 (MQ=255) tGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATAc > 1:317581/1‑130 (MQ=255) tGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATAc < 2:317581/130‑1 (MQ=255) tGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGc > 1:11768/1‑149 (MQ=255) gACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGcc > 8:304509/1‑149 (MQ=255) ggcggTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCca > 4:5883/1‑147 (MQ=255) gTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCtt < 8:341238/149‑1 (MQ=255) tCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTTAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCttt > 7:338177/1‑149 (MQ=255) tCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCTGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCttt < 4:171479/149‑1 (MQ=255) tCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCttt < 2:222539/149‑1 (MQ=255) tCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCttt < 2:103860/149‑1 (MQ=255) ggCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGc < 7:304509/149‑1 (MQ=255) gCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCa > 7:152659/1‑149 (MQ=255) cTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCa > 6:292099/1‑148 (MQ=255) aTCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACg > 2:39319/1‑149 (MQ=255) aTCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACg < 5:292099/149‑1 (MQ=255) cc‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCttt < 3:38886/136‑1 (MQ=255) cc‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCttt > 4:38886/1‑136 (MQ=255) c‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACgctgct < 3:120944/149‑1 (MQ=255) cACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGa < 6:61119/149‑1 (MQ=255) cTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATg < 1:204813/149‑1 (MQ=255) ttttCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGc > 8:266487/1‑73 (MQ=255) ttttCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGc < 7:266487/73‑1 (MQ=255) tCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGTCCACAGCTTTGCACTCACGCTGCTCGATGGCt < 1:39319/148‑1 (MQ=255) aTCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTc > 7:274801/1‑149 (MQ=255) tCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTc > 6:361235/1‑148 (MQ=255) cACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGcc > 4:248815/1‑149 (MQ=255) gcgTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCga < 3:110834/149‑1 (MQ=255) cgTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCgag < 8:152659/149‑1 (MQ=255) tCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATg < 8:98394/149‑1 (MQ=255) tCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATg < 3:215759/149‑1 (MQ=255) tGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGc > 4:26704/1‑149 (MQ=255) aaTGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATCGTGCTTg > 5:102521/1‑149 (MQ=255) aGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCa > 2:126335/1‑149 (MQ=255) gcTTCAGCCTGATCGACGCGCAGCAGGTGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccgaccgccgtcacgcaattgcggccgtagcccagcggggtgatttcaccg < 1:197589‑M2/149‑114 (MQ=255) ccTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggctatcgaaaagtgccggtgatcgaagccga < 6:230288‑M2/95‑67 (MQ=255) ccTGATCGACGCGCAGCAGATGGTCGAGCggctgaagcgctccatttcatcgatcaacgcggtggcgatcgaaaagtgccggtgatcgaagccga > 5:230288‑M2/1‑29 (MQ=255) cTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCgcagc < 7:176684/149‑1 (MQ=255) gATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCAc > 2:276474/1‑149 (MQ=255) aTCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACt < 7:343418/149‑1 (MQ=255) gACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTggg > 6:10675/1‑149 (MQ=255) gACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTggg < 2:11768/149‑1 (MQ=255) gACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTgg < 8:274801/148‑1 (MQ=255) cGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACTTcggcgg < 1:276474/149‑1 (MQ=255) | ACCAGCGCCGGTGAAATCACCCCGCTGGGCTACGGCCGCAATTGCGTGACGGCGGTCGGCTTCGATCACC‑GGCACTTTTCGATCGCCACCGCGTTGATCGATGAAATGGAGCGCTTCAGCCTGATCGACGCGCAGCAGATGGTCGAGCGGCTGGTCGGCACCTGCCGCAGCAATACCCTGGCGCCAATCAAGGGCCACAGCTTTGCACTCACGCTGCTCGATGGCTTGTCCAGCCGCGAGGAGATGGTGCTTGCCGCACTCAGCGCAGCACTGGGGGATATCCCGCACTTCGGCGG > NC_002947/3050370‑3050665 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |