New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5061127 =	62 (1.030)	3 (0.050)	3/254	NT	5.2%	intergenic (‑294/‑197)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase
	?	NC_002947	5061161 =	49 (0.850)					intergenic (‑328/‑163)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase

CAAAAACATCGGTCAATGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGA  >  NC_002947/5061015‑5061309                                                                                                                                                   |                                                                                                                                                     cttatttttgagacagaacactagcagagtcagtgcggcctcaatgtgagatggagagctaccagctattgaaacgactgcgtctcatccgtattcacgctcgctcttagtgTACGCCCGCTACCTTCAGTAACATTTCGTGCGTaca                                                                                                                                                     >  5:350789‑M1/113‑148 (MQ=255)  ttatttttgagacagaacactagcagagtcagtgcggcctcaatgtgagatggagacctaccagctattgacacgactgcgtctcatccgtattcacgctcgctcttagtgTACGCCCGCTACCTTCAGTAACATTTCGTGCGTacac                                                                                                                                                    <  2:155278‑M1/37‑1 (MQ=255)   aaaaCATCTGTCAATGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACt                                                                                                                                                   >  2:207131/1‑148 (MQ=255)     tttttgagacagaacactagcagagtcagtgcggcctcaatgtgagatggagacctaccagctattgacacgactgcgtctcatccgtattcacgctcgctcttagtgTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTaa                                                                                                                                                 >  1:155278‑M1/109‑148 (MQ=255)      aCATCGGTCAATGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAaga                                                                                                                                               <  5:139661/149‑1 (MQ=255)               aaTGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGt                                                                                                                                       >  8:353021/1‑148 (MQ=255)               aaTGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGt                                                                                                                                       <  3:345843/148‑1 (MQ=255)                aTGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTg                                                                                                                                      >  3:189970/1‑148 (MQ=255)                 tGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGaa                                                                                                                                    <  2:41726/149‑1 (MQ=255)                       tATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACTTTTCTTGCGTACACTAAGAGCGAGCGTGAATAc                                                                                                                                 <  7:237603/146‑1 (MQ=255)                       tATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACg                                                                                                                                <  1:208899/147‑1 (MQ=255)                        aTCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGAt                                                                                                                             >  2:158044/1‑149 (MQ=255)                         tCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGAt                                                                                                                             <  1:207131/148‑1 (MQ=255)                         tCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGAt                                                                                                                             <  3:112721/148‑1 (MQ=255)                                gAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTATGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCa                                                                                                                     >  8:89273/1‑149 (MQ=255)                                gAAAATAAGAATATTTCTTTTCGAGAGCGATACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACg                                                                                                                       >  2:306993/1‑147 (MQ=255)                                 aaaaTAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAg                                                                                                                    <  1:158044/149‑1 (MQ=255)                                       aGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCgtgt                                                                                                              <  4:120772/149‑1 (MQ=255)                                       aGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCgtg                                                                                                               <  8:173453/148‑1 (MQ=255)                                        gAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTc                                                                                                             <  2:277811/149‑1 (MQ=255)                                              ttCTTTTAGAGAGCGCTACTGTAGGGCGTGCACGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCACGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCTAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGc                                                                                                       >  8:291662/1‑149 (MQ=255)                                               tCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAgagc                                                                                                                                             <  8:5609/110‑1 (MQ=255)                                               tCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAgagc                                                                                                                                             >  7:5609/1‑110 (MQ=255)                                                      gagaGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGt                                                                                               <  2:243646/149‑1 (MQ=255)                                                         agCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTATGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGtctc                                                                                            <  7:89273/149‑1 (MQ=255)                                                          gcgcTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGtctc                                                                                            <  8:297603/148‑1 (MQ=255)                                                             cTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCAtc                                                                                        <  6:195594/149‑1 (MQ=255)                                                              tACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCAtct                                                                                       >  6:339822/1‑149 (MQ=255)                                                               aCTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCAtctc                                                                                      <  6:355383/149‑1 (MQ=255)                                                                cTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCAtct                                                                                       <  1:56996/147‑1 (MQ=255)                                                                  gTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTcaca                                                                                   >  1:185603/1‑149 (MQ=255)                                                                          tGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGcc                                                                           <  7:353021/149‑1 (MQ=255)                                                                               ggCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAgagcga                                                                                                                                           >  1:364077/1‑80 (MQ=255)                                                                               ggCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAgagcga                                                                                                                                           <  2:364077/80‑1 (MQ=255)                                                                                    tGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGActc                                                                 >  5:350323/1‑149 (MQ=255)                                                                                       aaCGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTGGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGc                                                              <  3:144226/149‑1 (MQ=255)                                                                                       aaCGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGc                                                              <  4:189970/149‑1 (MQ=255)                                                                                         cGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGc                                                              >  1:188187/1‑147 (MQ=255)                                                                                            tCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTATCCATCTCACATTGATGCAGCACTGAATCTGCTAgtg                                                         >  8:356105/1‑149 (MQ=255)                                                                                               aaaaTGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTc                                                      >  3:98166/1‑149 (MQ=255)                                                                                               aaaaTGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGGCTCCGTCGCACATTGAGGCCGGACTGACTCTGCTAGGGTTc                                                      >  4:222299/1‑149 (MQ=255)                                                                                                aaaTGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTGTCCATCTGACATTGAGGCCGCACTGACTCTGCTAGTGTTCt                                                     >  8:232625/1‑149 (MQ=255)                                                                                                   tGAAACATCGTAGTTACGACCGCTACCTTCAGTAACATTTAGTGCGTACACTAAGAGCGAGCGTGGATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGtc                                                  <  8:85410/149‑1 (MQ=255)                                                                                                      aaCATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCa                                               <  5:103792/149‑1 (MQ=255)                                                                                                           ttagtgtacgcacgaaatgttactgaaggtagcgggcgtaCACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCaaaaa                                           >  1:155278‑M2/41‑148 (MQ=255)                                                                                                             tAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATaa                                        <  4:326203/149‑1 (MQ=255)                                                                                                              gtgtacgcacgaaatgttactgaaggtagcgggcgtaCACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATaa                                        <  2:155278‑M2/111‑1 (MQ=255)                                                                                                              aGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACTCTAAGAGCGAGCTTGAATACGGATGAGACGCAGTCGTGTCAATAGCTTGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATaa                                        <  7:356105/148‑1 (MQ=255)                                                                                                               tgtacgcacgaaatgttactgaaggtagcgggcgtaCACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTTTCAATAGCTGGTAGCTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAg                                       >  5:350789‑M2/37‑148 (MQ=255)                                                                                                               gTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAg                                       <  2:185603/148‑1 (MQ=255)                                                                                                                              ttCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTa                       >  2:213402/1‑149 (MQ=255)                                                                                                                               tCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCGCATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAg                                       <  6:46095/132‑1 (MQ=255)                                                                                                                               tCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCGCATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAg                                       >  5:46095/1‑132 (MQ=255)                                                                                                                                   tAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGGTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCtt                  >  6:303427/1‑149 (MQ=255)                                                                                                                                   tAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCtt                  >  6:23099/1‑149 (MQ=255)                                                                                                                                      cATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCt               <  5:70666/149‑1 (MQ=255)                                                                                                                                           cGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTATGTCACCATCTCACCTTGTGGCCGCACAGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTTGt           <  6:170418/148‑1 (MQ=255)                                                                                                                                                   cacTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGa  >  4:320379/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CAAAAACATCGGTCAATGTCTTTATCCTATAGAAAATAAGAATATTTCTTTTCGAGAGCGCTACTGTAGGGCGTGCCCGGCTATGGAACGCTCCAAAATGAAACATCGTAGTTACGCCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGA  >  NC_002947/5061015‑5061309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.