New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5160379 =	57 (0.950)	3 (0.050)	3/248	NT	6.1%	coding (676/1212 nt)	PP_4543	hypothetical protein
	?	NC_002947	5160418 =	39 (0.690)					coding (637/1212 nt)	PP_4543	hypothetical protein

CGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCA  >  NC_002947/5160270‑5160566                                                                                                                                                      |                                                                                                                                                     ctggacgcgcagttggcgggcctgcctgggtggatggaacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCt                                                                                                                                                      >  8:309876‑M1/110‑149 (MQ=255)  gacgCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCt                                                                                                                                                      >  2:37571/1‑148 (MQ=255)   acgCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGa                                                                                                                                                    <  4:354124/149‑1 (MQ=255)   acgCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGa                                                                                                                                                    <  4:135362/149‑1 (MQ=255)     acgcgcagttggcgggcctgcctgggtggatggaacgcctgggctgccagtttcactggcaaaaccgggggtatcgcgacttccaggactttctcgacagcctcaGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAgg                                                                                                                                                  >  6:322566‑M1/106‑149 (MQ=255)            aTAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCga                                                                                                                                           <  8:18701/149‑1 (MQ=255)               ggTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCgaga                                                                                                                                         <  1:37571/148‑1 (MQ=255)               ggTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCgaga                                                                                                                                         <  4:155383/148‑1 (MQ=255)                      gcatagcataGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCt                                                                                                                                  <  2:225270/148‑1 (MQ=255)                      gcatagcataGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTg                                                                                                                                 <  2:42394/149‑1 (MQ=255)                        atagcatagAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTgg                                                                                                                                >  8:299572/1‑148 (MQ=255)                              tagAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTcgc                                                                                                                         <  4:309142/149‑1 (MQ=255)                                    gACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATAcc                                                                                                                   <  3:118987/149‑1 (MQ=255)                                       gAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATAccccc                                                                                                                >  3:103135/1‑149 (MQ=255)                                           tCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGtt                                                                                                            >  7:272281/1‑149 (MQ=255)                                             ccACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGttt                                                                                                           <  1:168335/148‑1 (MQ=255)                                              cACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTg                                                                                                         <  5:256961/149‑1 (MQ=255)                                              cACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTg                                                                                                         <  3:199378/149‑1 (MQ=255)                                                 tgtgCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGc                                                                                                        >  5:240751/1‑147 (MQ=255)                                                       tCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCga                                                                                                                                           <  6:343985/106‑1 (MQ=255)                                                       tCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCga                                                                                                                                           >  5:343985/1‑106 (MQ=255)                                                          tCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTg                                                                                             <  6:240751/149‑1 (MQ=255)                                                            cAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTgg                                                                                            >  7:238154/1‑148 (MQ=255)                                                              gTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTTTCACTGGCaa                                                                                         <  7:160873/149‑2 (MQ=255)                                                                 catcaCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTTTCACTGGCaaaa                                                                                       <  5:160015/148‑4 (MQ=255)                                                                  atcaCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGcc                                                                                       >  5:206519/1‑147 (MQ=255)                                                                     aCCGCGGTACCAGCGGAAGTCGATAGCCTGCCCCGCAACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTTCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGc                                                                                  <  5:225787/149‑1 (MQ=255)                                                                     aCCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGc                                                                                  >  4:200170/1‑149 (MQ=255)                                                                       cgcgGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCGCCTCACCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACACACGGTTTTGCCAGTGAAACTGGCAGCCCAGGCg                                                                                 >  1:273597/1‑149 (MQ=255)                                                                       cgcgGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTCCGCATCTGCTAGCGCTTCCGCCAGCTGAGGCTGTCGAGAAAGTCCAGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGt                                                                                >  5:368928/1‑149 (MQ=255)                                                                        gcgGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGtt                                                                               <  7:299572/149‑1 (MQ=255)                                                                               cAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTtccatcca                                                                        <  6:206519/149‑1 (MQ=255)                                                                                aGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCAc                                                                       >  3:57861/1‑149 (MQ=255)                                                                                   ggAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCca                                                                    >  2:368590/1‑149 (MQ=255)                                                                                               ccTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGc                                                         >  7:261864/1‑148 (MQ=255)                                                                                                    cccGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATA‑CCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTgc                                                  >  4:350433/1‑149 (MQ=255)                                                                                                     ccGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAAc                                                                                               >  6:90557/1‑104 (MQ=255)                                                                                                      cGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATA‑CCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTgcgc                                                <  3:350433/149‑1 (MQ=255)                                                                                                       gCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTgcgc                                                <  7:315170/149‑1 (MQ=255)                                                                                                          cctcagctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGt                                              >  6:322566‑M2/45‑149 (MQ=255)                                                                                                              agctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAg                                          >  8:309876‑M2/41‑149 (MQ=255)                                                                                                               CTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgcg                                        <  4:348507‑M1/149‑1 (MQ=255)                                                                                                               CTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgcg                                        <  2:307259‑M1/149‑1 (MQ=255)                                                                                                                ctcgcgcaagcgcaagcagatgcgcaaggagcgcgagcTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAgcg                                        >  7:279884‑M2/39‑149 (MQ=255)                                                                                                                         cTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCgg                               >  4:151065/1‑149 (MQ=255)                                                                                                                                    gcttgcgcttgcGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGAtg                    >  8:194320/1‑149 (MQ=255)                                                                                                                                     cttgcgcttgcgCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGAtgt                   >  1:200560/1‑149 (MQ=255)                                                                                                                                        gcgcttgcgcGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTgc                 <  3:348507/148‑1 (MQ=255)                                                                                                                                        gcgcttgcgcGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTgc                 <  3:200170/148‑1 (MQ=255)                                                                                                                                         cgcttgcgcGAGCTGAGGCTGTCGAGAAAGTGCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCTACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTgcg                <  6:368928/148‑1 (MQ=255)                                                                                                                                          gcttgcgcGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTgg                                                                                            <  4:292172/71‑1 (MQ=255)                                                                                                                                          gcttgcgcGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTgg                                                                                            >  3:292172/1‑71 (MQ=255)                                                                                                                                           cttgcgcGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTc             >  3:227037/1‑149 (MQ=255)                                                                                                                                                      tGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTgc                 >  2:136663/1‑134 (MQ=255)                                                                                                                                                      tGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCa  >  3:323589/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CGACGCACCGCATAGGTGTTGGCATAGCATAGAAAGACGAAATCCCACTGTGCCTCGTCCAGTTCATCACCGCGGTACCAGCGGAAGTCGATACCCTGCCCCGCCACCTGCTCG‑CGCTCCTTGCGCATCTGCTTGCGCTTGCGCGAGCTGAGGCTGTCGAGAAAGTCCTGGAAGTCGCGATACCCCCGGTTTTGCCAGTGAAACTGGCAGCCCAGGCGTTCCATCCACCCAGGCAGGCCCGCCAACTGCGCGTCCAGCGCCGGGTCGGTGAAGTTGATGTGCGCTCCGGAAAGCCCA  >  NC_002947/5160270‑5160566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.