New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816871	36 (0.600)	10 (0.190)	10/228	NT	23.5%	intergenic (+57/+72)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816898	34 (0.650)					intergenic (+84/+45)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

TACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACT  >  NC_002947/5816755‑5817043                                                                                                                                                |                                                                                                                                                  tACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacct                                                                                                                                              <  7:279417‑M2/149‑6 (MQ=255)   cGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgt                                                                                                                                            >  1:112956‑M2/1‑142 (MQ=255)       gtggCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgg                                                                                                                                          <  7:102082‑M2/147‑10 (MQ=255)          gCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCCCTCCCACAGGTAGCCCGTCGCTCACGCCCGCAGCTCACAtacctgtgggagcc                                                                                                                                     <  3:295386‑M2/149‑15 (MQ=255)           ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgg                                                                                                                                    >  8:163656‑M2/1‑134 (MQ=255)                         ccGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCCCGCCCGCTCCCACAGGTAGCGAGTCGCTCTCGCGCGCAGCTCACATACCGGTGGGAGCGGGCGCGCCCGCGa                                                                                                                        >  6:264227/1‑147 (MQ=255)                           gAAAGAGCCGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACGTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                    <  6:165454/149‑1 (MQ=255)                           gAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGGTCCCAAAGGTATCGCGTAGCTCTCGCGGGCAGCGAACCTACCGATGGGAGCGGGCGCGCCCTCGAAAgg                                                                                                                    >  4:59190/1‑149 (MQ=255)                             aaGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGc                                                                                                                  <  8:102082/149‑1 (MQ=255)                                  cagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                                                                             <  8:279417/149‑1 (MQ=255)                                     cagcTGAGTCTGGCCAAGCGTTACGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTCGCGCGGCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                          <  3:283385/149‑1 (MQ=255)                                                 gCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACGTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGc                                                                                               <  6:148974/148‑1 (MQ=255)                                                   cAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACCCCCGCTCCCACATGTAGCGCGTCGCTCACGCGCGCAGCTCACATACCGGTGGGAGCGGGCGCGCCCGCCCAAGGGCCTTTGCAGCTACTACAAGccgt                                                                                            >  7:198454/1‑147 (MQ=38)                                                   aaaGCGTTACGCGGAGGGGCGCTAGCCGGTACCGGCCCCTTCGCGGCCACCGCCGCTCCCTCCGTTAGGGCTTGCCCCTCGCGCGCAGCTCACATCCCTGCGGTAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCtt                                                                                            <  4:159735/148‑1 (MQ=255)                                                    aaGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                    >  3:101402/1‑124 (MQ=255)                                                    aaGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAgg                                                                                                                    <  4:101402/124‑1 (MQ=255)                                                                 tccGGCGCTACCCGGTCCCGGCCCCTTCGCGGGCACGCCCGCCCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATCCCTGTGGTAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCg                                                                               <  4:62351/146‑1 (MQ=38)                                                                        cTATCCGGTACCGGCCCCTTCGCGGGCACTCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                       <  4:107657/149‑1 (MQ=255)                                                                              ggTACCGGCCCCTTCGCGGGCACTCCCGCTCCCACAGGTAGCGCTTCGCTCTCGCGCGCATCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                 <  5:336348/149‑1 (MQ=255)                                                                                tACCGGGACCTTCGCTGGCACGCCCGCTCCCACAGTTAGCGCGTGGTTCTCGGGCGCATCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGc                                                               <  8:179695/149‑1 (MQ=38)                                                                                   cGGCCGCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAAc                                                            <  5:5223/149‑1 (MQ=255)                                                                                     gCCCCTTCGCGGGCACGCCCGCTACCACACGTAGCGCGGAGCTCGCGCGCGCAGCTCAAATAGCAGTGGGAGCGGGCGCGCCCGCGAAACGGCCTTTGAAGGTTCAACAACCCATTGAAGAACCCTCGCTCCCAACACCTCCGCACCGc                                                          >  6:164511/1‑149 (MQ=19)                                                                                                 gCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCCCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGt                                              >  8:43067/1‑149 (MQ=255)                                                                                                  cACGCCCGCTCCCAGAGGTTGCGCGTCGCGCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTc                                             <  4:295386/149‑1 (MQ=255)                                                                                                  cACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGAAGCTCACATCCCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGAACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCTTCGTc                                             <  4:315583/149‑1 (MQ=255)                                                                                                     gCCCGCTCCCACAGGTATCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgctt                                          <  5:84082‑M2/149‑106 (MQ=255)                                                                                                       ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactc                                                                       >  4:372363‑M2/1‑42 (MQ=255)                                                                                                       ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactc                                                                       <  3:372363‑M2/118‑77 (MQ=255)                                                                                                         gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctc                                                            <  2:345097‑M2/127‑88 (MQ=255)                                                                                                         gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctc                                                            >  1:345097‑M2/1‑40 (MQ=255)                                                                                                         gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                           >  6:28670/1‑112 (MQ=255)                                                                                                         gCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTcc                                                                           <  5:28670/112‑1 (MQ=255)                                                                                                           tCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgcgcccgcgaaagggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccac                                    <  1:228699‑M2/149‑112 (MQ=255)                                                                                                             ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgtgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccacca                                  <  1:249401‑M2/149‑114 (MQ=255)                                                                                                             ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                 <  8:175447/118‑1 (MQ=255)                                                                                                             ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                 >  7:175447/1‑118 (MQ=255)                                                                                                                   gTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgcgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttg                                         <  6:32156‑M2/136‑107 (MQ=255)                                                                                                                   gTAGCGCGTCGCTCTCGCGCGCAGCTCACAtacctgtgggagcgggcgcgcccgcgaaggggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttg                                         >  5:32156‑M2/1‑30 (MQ=255)                                                                                                                   gTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCcgccgc                            >  4:77359/1‑149 (MQ=255)                                                                                                                       cgcgTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCCTCGTCAGCATCCCCGCCGccgccccg                        >  1:321305/1‑149 (MQ=255)                                                                                                                           tCGCTCTCGCGCGCAGCTCACATACCGGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACCAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                    <  5:264227/149‑1 (MQ=255)                                                                                                                            cGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTg                   <  3:77359/149‑1 (MQ=255)                                                                                                                            cGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCAACGTCAGCATCCCCACCGCCGACCAGCCCTg                   >  4:271711/1‑149 (MQ=255)                                                                                                                               tctcGCGCGCAGCTCACAtacctgtgggagcgggcgcgcccgcgaaagggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccag                 <  1:40171‑M2/148‑131 (MQ=255)                                                                                                                                 tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCAt                <  3:59190/147‑1 (MQ=255)                                                                                                                                      cgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGTCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCGTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa         <  3:271711/149‑1 (MQ=255)                                                                                                                                      cgcAGCGCTCATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa         <  8:198454/149‑1 (MQ=255)                                                                                                                                       gcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAg        <  7:163102/149‑1 (MQ=255)                                                                                                                                           cTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACaa    <  7:43067/149‑1 (MQ=255)                                                                                                                                              acatacctgtgggagcgggcgcgcccgcgaaagggccggtaccggatagcgccgatcagcttaacgcttggccagactcagctgctgctctttcggcagcacccgcttggccaccacgtagtgcttctgccagtaaggcttgctcaag  >  2:228699‑M2/1‑3 (MQ=255)                                                                                                                                              acaTACCTGTGGGAGCGGTCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACaa    <  5:164511/146‑1 (MQ=255)                                                                                                                                              acaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCg                                                                >  6:297718/1‑86 (MQ=255)                                                                                                                                              acaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCg                                                                <  5:297718/86‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                  TACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACT  >  NC_002947/5816755‑5817043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.