New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5876984 =	49 (0.810)	3 (0.060)	3/216	NT	7.6%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	33 (0.670)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

GCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  >  NC_002947/5876918‑5877210                                                                                                                                                        |                                                                                                                                                 gccggcGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAAc                                                                                                                                                  <  2:11701/149‑1 (MQ=255) gccggcGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAAACCCCAACAAAAAAGAACACCACCAGCC‑GGGA‑‑ACCCTGGCGCACCCAGTAGGAGCGGGTTTAACCGCGCAc                                                                                                                                                  >  7:235194/1‑149 (MQ=255)    ggcggAGCTGCGGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGACGGCCGCGTAAAACCCTTCGCGGGTAAACCCGCTCCTACACGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAgg                                                                                                                                               <  4:257627/149‑1 (MQ=39)       ggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTTAACCCGCTCCGACAAGGTACCCCACCGGCC‑TGGC‑‑ACCGTGGCGATGCCGGTAGGAGCGGGTTTACCCGCGCACAGGccc                                                                                                                                            >  7:267732/1‑149 (MQ=255)         aTCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTTAAACCCCGCCGACAAGGTACCCCACCCGCC‑GGGG‑‑ACCGGGGCGGTCCCGGGAGGGGCGGGGGTAACCGCGCACACGcccgg                                                                                                                                          >  2:222990/1‑147 (MQ=255)          tCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCCCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGa                                                                                                                                         >  4:96453/1‑149 (MQ=255)                 ctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGc                                                                                                                                    <  1:222990/147‑1 (MQ=255)                    ctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtca                                                                                                                               <  1:285063/149‑1 (MQ=255)                    ctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAt                                                                                                                                 <  6:365676/147‑1 (MQ=255)                       ggCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagtc                                                                                                                            <  8:330520/149‑1 (MQ=255)                        gCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGACCACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                                             <  1:297941/149‑1 (MQ=255)                          aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATcagtcagt                                                                                                                         <  8:157298/149‑1 (MQ=255)                                 aaGGCGTGAAGAGCCTGAAGGCCTAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgctg                                                                                                                   <  4:215049/148‑1 (MQ=255)                                      gTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACa                                                                                                                                                 <  3:97131/113‑1 (MQ=255)                                      gTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGaa                                                                                                             >  1:54239/1‑149 (MQ=255)                                         aaGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAacac                                                                                                          <  2:35646/149‑1 (MQ=255)                                            agCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATa                                                                                                       <  2:54239/149‑1 (MQ=255)                                             gCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATa                                                                                                       <  3:96453/148‑1 (MQ=255)                                                       cGAGTAAAACCCTTCGCGGGTAAAACCCCACCAAAAAGGTACCCCACCCGCC‑AGGA‑‑AACCGGGCGATACCTGTAGGAGCGGGTTTACCCCCGAACAGGCCCAGAAAGGCCATAAGTCAATAGGCTGCATGAAAACATAGAACACGTTCg                                                                                            >  4:75195/1‑149 (MQ=255)                                                        gAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                                                                           <  3:75195/149‑1 (MQ=255)                                                        gAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                                                                           <  2:288708/149‑1 (MQ=255)                                                           tAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAac                                                                                                            <  7:337407/129‑1 (MQ=255)                                                             aaaCCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAg                                                                                                      <  3:61546/133‑1 (MQ=255)                                                             aaaCCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCa                                                                                       <  4:312802/148‑1 (MQ=255)                                                               aCCCTTCGCGGTTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGAc                                                                                                                                        <  3:272056/97‑1 (MQ=255)                                                                     CGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCa                                                                                >  1:57658‑M1/1‑147 (MQ=255)                                                                      GCGGGTAAACCCGCGCCTACAACGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGt                                                                             >  3:220854‑M1/1‑149 (MQ=255)                                                                              aCCCGCTCGTA‑AAGGTGCCCCCACGGCCGTGTA‑‑ACGTGGGCTATCCCTTTCGGCGGGTTTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTc                                                                     <  6:52245/149‑1 (MQ=255)                                                                               CCCGCTCCTACAACGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGAAGGAGCGGGTTTACACGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATggtgc                                                                    <  4:177322‑M1/149‑3 (MQ=255)                                                                                CCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc                                                                   <  5:306534‑M1/149‑1 (MQ=255)                                                                                 CGCTCCAACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTATGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTcccc                                                                  >  3:253695‑M1/1‑149 (MQ=255)                                                                                      ctcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGc                                                                >  7:121528‑M2/67‑149 (MQ=255)                                                                                      CTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTc                                                             >  6:316004‑M1/1‑149 (MQ=255)                                                                                       tcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAt                                                                         <  5:111182‑M2/74‑1 (MQ=255)                                                                                       tcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAt                                                                         >  6:111182‑M2/66‑139 (MQ=255)                                                                                            ggTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCAc                                                                                      >  6:356879/1‑118 (MQ=255)                                                                                            ggTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCAc                                                                                      <  5:356879/118‑1 (MQ=255)                                                                                            ggTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatccat                                                       >  5:84859/1‑149 (MQ=255)                                                                                                   cACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATc                                                >  6:273070/1‑149 (MQ=255)                                                                                                         cc‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTcc                                          <  5:333560/149‑1 (MQ=255)                                                                                                            tGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCCCTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGc                                        >  7:36482/1‑149 (MQ=255)                                                                                                            tGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGc                                        >  3:91281/1‑149 (MQ=255)                                                                                                                  aCCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCTATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGc                                    <  8:267732/149‑1 (MQ=255)                                                                                                                   ccGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCg                                   <  5:273070/149‑1 (MQ=255)                                                                                                                        gCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCAc                               <  6:306534/148‑1 (MQ=255)                                                                                                                          gATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTTCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCAACGt                            >  2:119367/1‑149 (MQ=255)                                                                                                                                tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTg                      >  8:54336‑M2/25‑149 (MQ=255)                                                                                                                                      agcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGGTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAAccc                <  7:172079‑M2/131‑1 (MQ=255)                                                                                                                                              tacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGaaa         <  7:54336‑M2/138‑1 (MQ=255)                                                                                                                                                 ccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCt     <  1:207379‑M2/142‑1 (MQ=255)                                                                                                                                                 ccgcgaaCAGGCCCTGACAGGCCAACAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAacccg     >  7:57414‑M2/8‑148 (MQ=255)                                                                                                                                                    cgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTgc  <  7:10845‑M2/145‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                                 GCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCC‑TGGA‑‑ACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC  >  NC_002947/5876918‑5877210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.