New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6126369	55 (0.910)	3 (0.050)	3/254	NT	5.4%	coding (1164/1704 nt)	PP_5374	choline/carnitine/betaine transporter family protein
	?	NC_002947	= 6126432	53 (0.910)					coding (1227/1704 nt)	PP_5374	choline/carnitine/betaine transporter family protein

TTCGGTGGTACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCTGTGTACGTTGAACTCCA  >  NC_002947/6126301‑6126580                                                                                                                                    |                                                                                                                                                      ttCGGTGGTACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCCGGGCGAAAAGGCCAAGTACGAAGGTGGCACGGGATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGtt                                                                                                                                     >  8:292125/1‑149 (MQ=255) ttCGGTGGTACCGCGCTCAAGGCTGAGCAGCACGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGtt                                                                                                                                     >  1:230085/1‑149 (MQ=255)   cGGTGGTACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCa                                                                                                                                   >  8:238980/1‑149 (MQ=255)     gtggtACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCAcc                                                                                                                                 <  1:7849/149‑1 (MQ=255)     gtggtACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCAcc                                                                                                                                 >  4:111752/1‑149 (MQ=255)     gtggtACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCAcc                                                                                                                                 >  8:103529/1‑149 (MQ=255)      tggtACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCAccc                                                                                                                                >  3:61949/1‑149 (MQ=255)         tACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAACGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCctgc                                                                                                                             >  3:78132/1‑149 (MQ=255)           ccGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCctgctg                                                                                                                           >  1:252522/1‑149 (MQ=255)              cgcTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCT‑CTGCCATGTTCACCCTGCTGcac                                                                                                                        <  3:111752/149‑1 (MQ=255)                cTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACaa                                                                                                                      <  2:294857/149‑1 (MQ=255)                   aaGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACATGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGa                                                                                                                    <  7:238980/148‑1 (MQ=255)                   aaGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCGTCTGCCATGTTCACCCTGCTGCACAAGa                                                                                                                    <  1:16663/149‑1 (MQ=255)                     ggCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCg                                                                                                                 <  7:356729/149‑1 (MQ=255)                       cTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGCAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGAc                                                                                                               >  8:26187/1‑149 (MQ=255)                           gcagcTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCg                                                                                                           >  2:139293/1‑149 (MQ=255)                              gcTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTa                                                                                                        >  2:74285/1‑149 (MQ=255)                                      gTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTggg                                                                                                 >  3:322807/1‑148 (MQ=255)                                       tCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCAGAAGATCGACGCCGGTACGTTGGGc                                                                                                >  7:75961/1‑148 (MQ=255)                                       tCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGc                                                                                                >  4:109785/1‑148 (MQ=255)                                         agcagcACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGGCGGTACGTTGGGCAAg                                                                                             <  3:168981/149‑1 (MQ=255)                                         agcagcACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAg                                                                                             <  7:103529/149‑1 (MQ=255)                                         agcagcACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAg                                                                                             <  1:139293/149‑1 (MQ=255)                                           cagcaCGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGt                                                                                           >  8:81694/1‑149 (MQ=255)                                            agcaCGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTCGCACGGTATTTCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTACACCCTGCTGCACAAGATCGACGCCGCTACGTTGGGCAAGGTg                                                                                          >  7:355208/1‑149 (MQ=255)                                               aCGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAaccactggcaaccagttctgcgtgctgctgacgatcgagctgctcagccttgagcgcggta                                                                                          >  6:155652‑M2/1‑86 (MQ=255)                                               aCGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAaccactggcaaccagttctgcgtgctgctgacgatcgagctgctcagccttgagcgcggta                                                                                          <  5:155652‑M2/147‑62 (MQ=255)                                                      aCTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGc                                                                                <  3:109785/149‑1 (MQ=255)                                                          gTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTg                                                                              <  4:61949/147‑1 (MQ=255)                                                          gTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTg                                                                              <  4:91028/147‑1 (MQ=255)                                                           ttGACAGTCGTGAGCTGCAGGGCGACAAGGCCAACTACGAACGTGGCACGGTAATGCTGGCGACCAAGCAGGAAACCACCG‑CTGACATGTTCACCCTGCTGCACAAGATCGACGCGGGTCCGTGGGGCAAGGTGCTGAGCGTGCTGGTc                                                                           >  6:316135/1‑149 (MQ=255)                                                             gCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCt                                                                          <  7:81694/148‑1 (MQ=255)                                                             gCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCt                                                                          <  2:252522/148‑1 (MQ=255)                                                              ccAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCAGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCTTGCTGGACTg                                                                         >  7:303220/1‑148 (MQ=255)                                                               cAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTa                                                                       >  3:329541/1‑149 (MQ=255)                                                                aGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAaccactggcaaccagttctgcgtgctgctgacgatcgagctgctcagccttgagcgcggtaccaccgaacaccgacatc                                                                        <  3:55097‑M2/148‑80 (MQ=255)                                                                aGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTAt                                                                      >  5:132964/1‑149 (MQ=255)                                                                 gtggtgAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATc                                                                     <  4:329541/149‑1 (MQ=255)                                                                  tggtgAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTg                                                                                 <  1:216645/136‑1 (MQ=255)                                                                  tggtgAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTg                                                                                 >  2:216645/1‑136 (MQ=255)                                                                         cTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTCCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGc                                                             >  5:143706/1‑149 (MQ=255)                                                                            cAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATTTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGa                                                           <  2:159116/148‑1 (MQ=255)                                                                                         ccAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTg                                                                                                   <  1:309699/95‑1 (MQ=255)                                                                                         ccAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTg                                                                                                   >  2:309699/1‑95 (MQ=255)                                                                                          cAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATcc                                                                    <  4:168991/125‑1 (MQ=255)                                                                                               aCGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGc                                        <  5:37979/148‑1 (MQ=255)                                                                                                   aGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACt                                   >  5:251915/1‑149 (MQ=255)                                                                                                              tATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGTTACGTTTGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAg                        <  4:78132/149‑1 (MQ=255)                                                                                                              tATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAg                        <  2:230085/149‑1 (MQ=255)                                                                                                                    tGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCTGGCACCCAGGTGCtg                  >  3:298947/1‑149 (MQ=255)                                                                                                                      gCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCtgt                 <  4:322807/148‑1 (MQ=255)                                                                                                                      gCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCtgt                 <  7:26187/148‑1 (MQ=255)                                                                                                                      gCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGGCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCtgt                 <  7:292125/148‑1 (MQ=255)                                                                                                                        gACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCTGTGTa              >  4:81806/1‑149 (MQ=255)                                                                                                                            aaGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCCGTACGTTGGGCAAGGTGCTTAGCGAGCTGGTAAGTATCCTCCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGAGCTGAGTACGtt          >  3:128507/1‑149 (MQ=255)                                                                                                                            aaGCAGGAAACCACCG‑CTCCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCTGTGTACGtt          <  6:143706/149‑1 (MQ=255)                                                                                                                                aGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCTGTGTACGTTGaaa      >  7:40468/1‑148 (MQ=255)                                                                                                                                    aaCCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGGGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGGCGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCTGTGTACGTTGAACTCCa  <  4:280864/149‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                      TTCGGTGGTACCGCGCTCAAGGCTGAGCAGCTCGATCGTCAGCAGCACGCAGAACTGGTTGCCAGTGGTGAGCTGCAGGGCGACAAGGCCAAGTACGAAGGTGGCACGGTATTGCTGGCGACCAAGCAGGAAACCACCG‑CTGCCATGTTCACCCTGCTGCACAAGATCGACGCCGGTACGTTGGGCAAGGTGCTGAGCGTGCTGGTCTGTATCCTGCTGGCGACGTACTTCATCACCTCGGCCGACTCCGGCACCCAGGTGCTGTGTACGTTGAACTCCA  >  NC_002947/6126301‑6126580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.