| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,951,159 | 0 | T | C | 100.0% | 115.6 / NA | 34 | intergenic (‑123/+72) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/10); total (24/10) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGC > NC_002947/3951016‑3951301 | ggcTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTcg < 3:164374/149‑1 (MQ=255) aaGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAACCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGCGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGc < 5:182740/149‑1 (MQ=255) gAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGcc > 5:281425/1‑148 (MQ=255) gTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCacc > 8:214378/1‑149 (MQ=255) gcgAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccgac > 1:239304/1‑149 (MQ=255) gAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCaccgaccg > 3:301341/1‑149 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCgg > 4:255472/1‑93 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCgg < 3:255472/93‑1 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGTCCAATTCCCCAGGCGGcc < 8:88853/123‑1 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGTCCAATTCCCCAGGCGGcc > 7:88853/1‑123 (MQ=255) cccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCGAGACCTTTCGCCACGCAAGCCCGCTCCCCCAAAAGCGCTTGCCACAGAGGCCAATGCCCCAGGCGGCCCATGATACGCACCGACCGGCCAGGGGCGGGGACAAc > 1:267454/1‑149 (MQ=255) cccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCaa > 3:172867/1‑147 (MQ=255) ccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAg > 4:161545/1‑149 (MQ=255) ccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAg > 5:33451/1‑149 (MQ=255) gCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTg > 1:286673/1‑149 (MQ=255) gCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATgcg > 3:276403/1‑149 (MQ=255) gCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTg > 6:163331/1‑149 (MQ=255) tCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg > 6:334670/1‑149 (MQ=255) cAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg > 8:41512/1‑148 (MQ=255) gcAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcg < 7:214378/149‑1 (MQ=255) cAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGc > 3:77859/1‑73 (MQ=255) cAGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGc < 4:77859/73‑1 (MQ=255) aGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgcc > 2:21774/1‑149 (MQ=255) aGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCCGCCACCCGCTGGGTCAACAGATGCATGCGCTGGGCAATcgcg > 8:316549/1‑148 (MQ=39) aGAAAGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGACACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATctcc > 1:364382/1‑149 (MQ=255) aaaGAGGGGAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgccgc > 6:269005/1‑149 (MQ=255) ggggAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCg > 7:292634/1‑149 (MQ=255) gggAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCgg > 5:267987/1‑149 (MQ=255) ggAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGt < 2:239304/149‑1 (MQ=255) gAGCGCTGCGCG‑CTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGCGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTg > 2:170563/1‑149 (MQ=255) cgcg‑cTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCgg < 3:161545/148‑1 (MQ=255) cgcg‑cTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCACGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGc > 4:276992/1‑113 (MQ=255) cgcg‑cTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCACGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGc < 3:276992/113‑1 (MQ=255) gcg‑cTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGc < 4:276403/149‑1 (MQ=255) | GGCTGAGGTCGAAGTTGCCATGCCAAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGCGCTGCGCG‑CTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGGCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGC > NC_002947/3951016‑3951301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |