| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 353,067 | 0 | A | G | 100.0% | 84.7 / NA | 27 | intergenic (+34/+84) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/17); total (10/17) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CTGGAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCAGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGT > NC_002947/352923‑353202 | cTGGAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGc < 7:57030/148‑1 (MQ=255) aTGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTcc < 1:296683/149‑1 (MQ=255) aTGCCAGCGCGGTGCTGGCGGCCAACATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGAAC‑GGGGCTGATTTGC‑AGCCCTTCGAGGGCACGccccaaac > 7:233016/1‑144 (MQ=255) tGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTccc < 3:318109/149‑1 (MQ=255) tGCCAGCGCGGTGCTGGCGGCCAGCAGCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGGCGTGCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTccc < 7:341931/149‑1 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTc < 1:77486/144‑1 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTc > 2:77486/1‑144 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCcaca < 4:185745/149‑1 (MQ=255) aGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAg > 2:288111/1‑149 (MQ=255) gTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGTCACGCCCGCTCCCACAGGTTTGc < 7:19270/149‑1 (MQ=255) gcggcCAGCATCTTCCACTTTGGTGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTgaga < 6:151604/148‑1 (MQ=255) gcggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCTGGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:288111/147‑1 (MQ=255) cATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTgg < 7:324072/149‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGt > 4:93530/1‑126 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGt < 3:93530/126‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCggg < 2:19772/149‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCgg < 5:18846/148‑1 (MQ=255) aGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGcc > 7:51385/1‑149 (MQ=255) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTGCTGAGATCAGAGGGGGAGCCGGCGTGCCCGCGAACGGCCGCGaa > 7:35102/1‑149 (MQ=38) ccAAGGCCTACATGGCTGCGCGGGGGTGCGTCGTTCGCTTATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCAGGCCCGCTCCCACAGGTTTGCTTATATCTTTGTGGGAGGGGGGGTGCCCGCGAAGGGCCGCGAAGCGGcc < 8:51385/149‑1 (MQ=37) tACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGCGAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTg > 1:104009/1‑149 (MQ=255) tGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTc > 6:377485/1‑76 (MQ=255) tGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTc < 5:377485/76‑1 (MQ=255) aTCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGc > 7:77417/1‑149 (MQ=255) cc‑GGGGCTGCTTTGC‑AGCCCTTCGCGGGCACGCCCGCTCCCAGTGGTTTGCTGTGATCTCTTTGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 8:35102/149‑1 (MQ=38) gC‑AGCCCTTCGCGGGCACGCCCGCTACCACAGGTTTGCATAAATATCTGTTGGAGCTGGCGTGCCCGCGAAGGGCCGCGAAGCAGCCCCAATTGCTTAAAACCTAGTTCTTTACCAGCAACGCGTGGTAAAGCTCGGTATAACCGaaa > 2:228136/1‑146 (MQ=19) ggaggccTTCGCGGGCACGCCGGCTCCGACAGGTTTGCTGAGATCTGTGTGGGAGCGGTCGTGCCCGCGAAGGGCAGCTAAGCGTCCCCAATTGCTTCAACCGTGGTTCTTGCCTAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 1:228136/141‑1 (MQ=255) | CTGGAAGGGCATGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACC‑GGGGCTGCTTTGC‑AGCCCTTCGCAGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGT > NC_002947/352923‑353202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |