Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,375,593 | G→T | 10.0% | intergenic (‑58/+52) | PP_5637 ← / ← PP_3851 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,375,593 | 0 | G | T | 10.0% | 175.8 / 8.4 | 60 | intergenic (‑58/+52) | PP_5637/PP_3851 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (25/29); new base T (4/2); total (29/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 |
GACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTCGGCCAGCAG > NC_002947/4375448‑4375737 | gACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATa > 5:180588/1‑149 (MQ=255) gACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATa < 2:224263/149‑1 (MQ=255) cccAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACa < 5:73704/149‑1 (MQ=255) ccAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAg > 6:203931/1‑149 (MQ=255) agGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATCTTTATACAGTAtt < 1:243354/149‑2 (MQ=255) agGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATc > 8:192915/1‑149 (MQ=255) tCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGta > 4:150902/1‑148 (MQ=255) tgtgATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAgat > 8:21329/1‑149 (MQ=255) tCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAgatgccgatgc > 2:323346/1‑149 (MQ=255) tCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAgatgccgatgc < 6:36449/149‑1 (MQ=255) aTGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAgg < 1:129011/149‑1 (MQ=255) aCGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATc > 2:106809/1‑149 (MQ=255) cgcgGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATc < 5:203931/149‑1 (MQ=255) cgGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATcag < 3:83479/149‑1 (MQ=255) gAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATcagca < 2:188918/149‑1 (MQ=255) gCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGAt > 6:197416/1‑147 (MQ=255) gCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCa < 3:65611/149‑1 (MQ=255) gCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCa < 6:180588/149‑1 (MQ=255) tttCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAgg > 3:127551/1‑149 (MQ=255) ccGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACGTGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGc > 4:77422/1‑149 (MQ=255) ccGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAgggg < 7:21329/148‑1 (MQ=255) cGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGTCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCg < 3:150902/149‑1 (MQ=255) tAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCgg > 1:1260/1‑148 (MQ=255) ggCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGaa < 2:6556/148‑1 (MQ=255) aGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAg < 6:295012/71‑1 (MQ=255) aGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAg > 5:295012/1‑71 (MQ=255) aGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCtt < 8:40977/146‑1 (MQ=255) gggCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGccc < 5:127482/149‑1 (MQ=255) aaGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCa > 7:92180/1‑149 (MQ=255) aGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCAt < 4:127551/149‑1 (MQ=255) aCGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTgg < 8:92180/149‑1 (MQ=255) aCGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTgg > 4:49709/1‑149 (MQ=255) cGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGc < 1:233806/149‑1 (MQ=255) cGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGc < 2:1260/149‑1 (MQ=255) aTGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAAt > 5:331748/1‑148 (MQ=255) tGCTCGCGGTGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCa > 5:268206/1‑149 (MQ=255) cTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCAcc < 7:192915/149‑1 (MQ=255) cTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCAc < 3:49709/148‑1 (MQ=255) tCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCAccc > 6:65911/1‑149 (MQ=255) aaCGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGt < 1:343009/147‑1 (MQ=255) aaCGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGt > 2:343009/1‑147 (MQ=255) aaCGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTaa > 8:53103/1‑149 (MQ=255) gaaggaagTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGa > 8:106127/1‑149 (MQ=255) aggaagTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGTGCAATCGCCGATCAGGAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGaca < 2:100640/149‑1 (MQ=255) ggaagTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGacac > 5:218220/1‑149 (MQ=255) ggaagTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGacac < 1:130745/149‑1 (MQ=255) gTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGaa > 6:174708/1‑87 (MQ=255) gTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGaa < 5:174708/87‑1 (MQ=255) cATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGa < 1:106809/149‑1 (MQ=255) cGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAAc < 5:345776/148‑1 (MQ=255) tatacgaTACTGTATCTTTATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACa > 8:353340/7‑147 (MQ=255) cAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGt < 7:162846/71‑1 (MQ=255) cAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGt > 8:162846/1‑71 (MQ=255) gaTACTGTATCTTTATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAAc > 6:358556/2‑141 (MQ=255) gaTACTGTATCTTTATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAAc < 5:358556/140‑1 (MQ=255) gaTACTGTATCTTTATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTc > 5:47962/2‑149 (MQ=255) gaTACTGTATCTTTATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTc > 8:345958/2‑149 (MQ=255) aaTACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTc < 6:331748/149‑1 (MQ=255) tGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGAcaccac > 7:325546/1‑129 (MQ=255) tGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGAcaccac < 8:325546/129‑1 (MQ=255) tGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTCGGc > 3:328327/1‑147 (MQ=255) taAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTCGGCcagcag > 2:50514/1‑149 (MQ=255) | GACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGATACAGTATCGTATAGATGCCGATGCCGCAGGGCAATCGCCGATCAGCAGATCAGTGAAGGGGCGGAAGCTCCTTGCCCCGCATCTTGGCAATCACCCGAAGCTGGTAATCGGACACCACCTGAAACAGAGACTCGGCCAGCAG > NC_002947/4375448‑4375737 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |