Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,574,229 | G→C | 8.0% | G301R (GGC→CGC) | glgX → | glycogen debranching enzyme |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,574,229 | 0 | G | C | 8.0% | 181.5 / 4.5 | 59 | G301R (GGC→CGC) | glgX | glycogen debranching enzyme |
Reads supporting (aligned to +/- strand): ref base G (31/23); new base C (3/2); total (34/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTACCTGGCCAGCGGCAAGATCGCCGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGCCGGCGAAAT > NC_002947/4574090‑4574377 | cTACCTGGCCAGCGGCAAGATCGCCGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGGGCGCGGCCCGACCCTGTCGATGCCGCGCATCGACa < 6:268100/149‑1 (MQ=255) tGGCCAGCGGCAAGATCGCCGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGcc > 6:194392/1‑149 (MQ=255) aGATCGCCGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGc > 4:358290/1‑149 (MQ=255) gCCGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGa < 7:117757/148‑1 (MQ=255) ccGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATg > 4:342592/1‑149 (MQ=255) ttCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGga < 7:324502/149‑1 (MQ=255) aaGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACATCCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGgacga < 1:240908/149‑1 (MQ=255) aaGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGgacga > 3:164295/1‑149 (MQ=255) ggAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCg > 5:367019/1‑142 (MQ=255) ggAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCg < 6:367019/142‑1 (MQ=255) gagaTGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGgacgac > 6:130826/1‑147 (MQ=255) tGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGc < 4:203425/135‑1 (MQ=255) tGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGc > 3:203425/1‑135 (MQ=255) tGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAgcgc < 4:168582/149‑1 (MQ=255) cgTCGTGCAGGTGCGCGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAgcgc > 3:3158/2‑148 (MQ=255) cgcACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCtactac < 5:194392/149‑1 (MQ=255) gcACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACa < 7:50761/149‑1 (MQ=255) aCCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACATCCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTAcc > 1:265238/1‑117 (MQ=255) aCCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTAcc < 2:265238/117‑1 (MQ=255) aCCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATc < 3:264716/149‑1 (MQ=255) cACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAAc < 3:342592/147‑1 (MQ=255) cACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTAATGCCGGACGACAAGCGCTACTACCTCACCGa > 6:262999/1‑149 (MQ=255) acgacgCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGAc > 7:37747/1‑149 (MQ=255) acgCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTcc < 5:164474/149‑1 (MQ=255) tGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTccggcaccggc > 4:202906/1‑148 (MQ=255) aGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAac < 5:130826/149‑1 (MQ=255) gTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGAt > 2:72658/1‑101 (MQ=255) gTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGAt < 1:72658/101‑1 (MQ=255) tGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACAcc < 5:319640/149‑1 (MQ=255) gACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCt > 3:34747/1‑149 (MQ=255) aCGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTccggcaccg > 5:311106/1‑132 (MQ=255) aCGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTccggcaccg < 6:311106/132‑1 (MQ=255) cGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGa < 3:202906/149‑1 (MQ=255) ggTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAgc > 2:228760/1‑101 (MQ=255) ggTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAgc < 1:228760/101‑1 (MQ=255) gTCTACAACCACACCGCCGAAGGCAACGCGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGCCTCCGGCACCGGCAACACCCTGGACCTGCGCCa > 7:122187/1‑149 (MQ=255) cTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAAc > 2:116477/1‑112 (MQ=255) cTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAAc < 1:116477/112‑1 (MQ=255) tACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCAccc > 3:109223/1‑149 (MQ=255) aCAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACCCCCTGGACCTGAGCCAcccc > 6:289041/1‑149 (MQ=255) cAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCt > 1:228680/1‑149 (MQ=255) ccACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCCCCCCTGCg > 4:93053/1‑149 (MQ=255) ccgccgAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGtgctg < 4:164295/149‑1 (MQ=255) cgcagAAGGCAACGAGAGCGGCCCGACCCTGTCGAAGCGCCGCATCGACAACGCCTCGTACTACAGCCTGATGCCGGACGACAAGCGCTACTACAACAACGACTCCGGCACCGGCAACACCCTGGACCAGACCCACCCCTCCGtgatg > 2:82758/1‑148 (MQ=255) aaGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCGTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGTCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTg < 1:82758/149‑1 (MQ=255) gCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTc < 8:37747/149‑1 (MQ=255) cgGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACtcgc < 2:228680/149‑1 (MQ=255) cccGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACtcgcttc > 6:373889/1‑149 (MQ=255) cGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACtcgcttcgc > 2:118600/1‑149 (MQ=255) ccTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACt > 3:294569/1‑149 (MQ=255) tGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAATACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTgg > 7:35693/1‑149 (MQ=255) tGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTgg > 8:41891/1‑149 (MQ=255) gTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCCCCGACTCGCTTCGCTACTggg > 8:146930/1‑149 (MQ=255) gTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTggg > 3:12181/1‑149 (MQ=255) tCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGc > 2:306146/1‑149 (MQ=255) tCGATGCCGCGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTgg > 6:372007/1‑147 (MQ=255) tCGATGCCGCGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTgg < 5:372007/147‑1 (MQ=255) tCGATGCCGCGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTCGGc > 4:143900/1‑149 (MQ=255) gATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGCCg > 5:138079/1‑149 (MQ=255) cgGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGCCGGCGaaa < 4:109223/149‑1 (MQ=255) cgGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGCCGGCGaaa < 4:34747/149‑1 (MQ=255) ggCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGCCGGCGAAAt < 4:12181/149‑1 (MQ=255) | CTACCTGGCCAGCGGCAAGATCGCCGAGTTCAAGGAGATGGTCGCGCACCTGCACGACGCGGGGCTTGAGGTGATCCTGGACGTGGTCTACAACCACACCGCCGAAGGCAACGAGCGCGGCCCGACCCTGTCGATGCGCGGCATCGACAACGCCTCGTACTACCGCCTGATGCCGGACGACAAGCGCTACTACATCAACGACTCCGGCACCGGCAACACCCTGGACCTGAGCCACCCCTGCGTGCTGCAGTTGGTCACCGACTCGCTTCGCTACTGGGCCGGCGAAAT > NC_002947/4574090‑4574377 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |