Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,768,303 | A→T | 8.8% | L170Q (CTG→CAG) | PP_4218 ← | lipase/esterase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,768,303 | 0 | A | T | 8.8% | 152.5 / 5.7 | 57 | L170Q (CTG→CAG) | PP_4218 | lipase/esterase family protein |
Reads supporting (aligned to +/- strand): ref base A (26/26); new base T (2/3); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.96e-01 |
TTCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGCCAGCCGGTAGCCCAC > NC_002947/4768164‑4768451 | ttCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTaccac > 1:57950/1‑149 (MQ=255) cAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCACCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccatt < 5:362756/148‑3 (MQ=255) aaGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattc < 5:286993/148‑4 (MQ=255) aaGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattc > 6:286993/1‑145 (MQ=255) aaGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGa < 8:25537/149‑1 (MQ=255) aaGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGa < 5:288952/149‑1 (MQ=255) aGGTAACCGCTGCCCTAGCTCGGCACCGAAGTCCGCCGGCAACTGGCATCGTGCACCTGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACt < 4:45434/149‑1 (MQ=255) aGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCGACCACCGACACt > 3:45434/1‑149 (MQ=255) tAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTc < 5:329799/149‑1 (MQ=255) aaCCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCg > 4:13784/1‑149 (MQ=255) cGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACAGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGcc > 8:338711/1‑148 (MQ=255) tGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCccacc > 3:248875/1‑149 (MQ=255) ccATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCccacca < 3:119734/148‑1 (MQ=255) aTAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCg > 1:260129/1‑149 (MQ=255) cTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTc > 7:52193/1‑149 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattctg > 6:153804/1‑116 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCTGGCTaccattctg < 5:153804/121‑6 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTgc > 6:149514/1‑149 (MQ=255) ccGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTgc > 2:261554/1‑149 (MQ=255) cGAAGGCCGCCTGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTccg > 6:254093/1‑149 (MQ=255) gccgccGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCAAGTCGCTGCGCATc > 1:217392/1‑148 (MQ=255) ccgGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACTACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGc > 3:216014/1‑149 (MQ=255) cgGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACTACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGcc < 4:216014/149‑1 (MQ=255) cATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGGGCATCGATGCGCAGCGACtgg < 5:292809/149‑3 (MQ=255) cATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCg > 4:370593/1‑149 (MQ=255) cGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGa < 3:360572/149‑1 (MQ=255) tCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGaccaacca < 7:225269/148‑1 (MQ=255) aTTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAgcg > 4:127201/1‑149 (MQ=255) aTTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAgc < 5:149514/148‑1 (MQ=255) aTTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAgc < 8:240032/148‑1 (MQ=255) aTTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAgc < 1:261554/148‑1 (MQ=255) ccTGCCGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCATGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAg < 4:305928/149‑1 (MQ=255) ccTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATc < 8:80009/109‑1 (MQ=255) ccTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATc > 7:80009/1‑109 (MQ=255) ccTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCa < 3:13784/148‑1 (MQ=255) ccTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAg < 7:338711/149‑1 (MQ=255) cTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCACCCAGCGCCAgg > 6:327341/1‑149 (MQ=255) ggTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGc < 2:147208/149‑1 (MQ=255) ccGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATc < 8:52193/148‑1 (MQ=255) ggCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAg < 2:284199/140‑1 (MQ=255) ggCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAg > 1:284199/1‑140 (MQ=255) gCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCACCCAGCGCCAGGCATCCAGGGCATCGTCa > 6:206412/1‑149 (MQ=255) gCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTg < 4:248875/149‑1 (MQ=255) gCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTg > 3:73288/1‑149 (MQ=255) gCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTg > 3:68288/1‑149 (MQ=255) gcgcTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCt < 3:370593/148‑1 (MQ=255) cgcAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGa < 2:260129/149‑1 (MQ=255) aGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAAc < 4:159382/149‑1 (MQ=255) gCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACg > 4:97538/1‑149 (MQ=255) ccAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGc < 3:127201/149‑1 (MQ=255) aaCTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCa > 4:31194/1‑149 (MQ=255) ggCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTgcggc < 2:57950/148‑1 (MQ=255) cAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGCCa > 1:272178/1‑149 (MQ=255) cAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTCCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCATTGGCTGACGGGAAACGCCACTGCGgcgc > 3:229606/1‑147 (MQ=255) gAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGCCAGc < 5:254093/149‑1 (MQ=255) gTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGCCAGCCgg > 1:315123/1‑147 (MQ=255) gCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGCCAGCCGGTAGcc > 1:379080/1‑149 (MQ=255) aGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCCCTGCGCCGCCACCCGGTAGccccc > 6:329246/1‑147 (MQ=255) | TTCAAGCAGGTAACCGCTGCCATAGCGCTGCACCGAAGGCCGCCGGCAACTGGCATCGGTCACCGGGTAGATCATTACCTGCAGGCGCGGTGCCGGCAGCTCGCGCTGCGCAGCCAACTGGTTGGCCAGAATGGTAGCCAGGCTACCACCGACACTGTCGCCCACCACCGCCAGTCGCTGCGCATCGATGCCCAGCGCCTCGGCCTGCTCGACCAACCAGCGCCAGGCATCCAGGGCATCGTCACTGGCTGTCGGGAAACGCCACTGCGGCGCCAGCCGGTAGCCCAC > NC_002947/4768164‑4768451 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |