| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 447,156 | C→A | 5.3% | intergenic (+36/‑266) | PP_0368 → / → PP_0369 | acyl‑CoA dehydrogenase/diguanylate cyclase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 447,156 | 0 | C | A | 5.3% | 299.0 / 3.5 | 92 | intergenic (+36/‑266) | PP_0368/PP_0369 | acyl‑CoA dehydrogenase/diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base C (50/37); new base A (3/2); total (53/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.79e-01 | |||||||||||
ACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTC > NC_002947/447014‑447299 | aCTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑Agg > 3:257742/1‑149 (MQ=255) ttCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑Ag > 5:50420/1‑146 (MQ=255) ttCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑Ag < 6:50420/146‑1 (MQ=255) ccAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCgg < 3:34478/148‑1 (MQ=255) gcgcATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGttt > 5:98290/1‑149 (MQ=255) cATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGtttttt < 7:39320/149‑1 (MQ=255) aTCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTa > 8:153665/1‑149 (MQ=255) aTCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTa < 1:110027/149‑1 (MQ=255) tCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAGCCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTAc < 7:78584/149‑1 (MQ=255) ccTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACg > 3:213963/1‑149 (MQ=255) tGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGtttttt < 1:180620/144‑1 (MQ=255) tGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGtttttt > 2:180620/1‑144 (MQ=255) gCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGGGttttg > 4:7092/1‑141 (MQ=38) gCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGGGttttg < 7:289487/142‑2 (MQ=38) gCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGGGttttg < 3:7092/142‑2 (MQ=38) gCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCT‑CCCGGTCAGGGCAGGCGGGttttg > 8:289487/1‑141 (MQ=38) aCGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCa < 5:379700/149‑1 (MQ=255) gtacccgtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAgg > 3:60107/1‑149 (MQ=255) ccgtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGtt > 5:306652/1‑147 (MQ=255) ccgtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGtt > 5:311761/1‑147 (MQ=255) gtacccATGTGGTGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGc > 6:337654/1‑149 (MQ=255) gtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑Ag > 8:226533/1‑121 (MQ=255) gtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑Ag < 7:226533/121‑1 (MQ=255) cccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTg > 8:97961/1‑149 (MQ=255) ccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCa > 2:68649/1‑137 (MQ=255) ccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCa < 1:68649/137‑1 (MQ=255) gCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCg > 1:243272/1‑149 (MQ=255) gCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCg < 5:307824/149‑1 (MQ=255) cTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGATCgg < 5:260195/149‑1 (MQ=255) cTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCgg < 7:153665/149‑1 (MQ=255) cTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCgg < 8:198967/149‑1 (MQ=255) gTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGt > 8:48334/1‑149 (MQ=255) aacaacCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGa < 2:243272/149‑1 (MQ=255) cTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATTCTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTc > 7:226318/1‑102 (MQ=255) cTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATTCTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTc < 8:226318/102‑1 (MQ=255) cTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAATACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggc < 6:332659/149‑1 (MQ=255) gATGGCGATGGACGAAGAGCACTTCGGCATGTCGTACTGATACTGGCGCTGTACCCAAAACCCGACTGCCATGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCAGCGAAGAggccg > 4:138852/1‑149 (MQ=255) aTGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggccg < 7:48334/148‑1 (MQ=255) gATGGACGAAGAGCACTTCGGCCTGTAGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCctg > 4:124753/1‑149 (MQ=255) acaggccGAAGTGCTCTTCGTCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCctg > 2:159004/7‑149 (MQ=39) ggACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggccagcagggccg > 8:64571/1‑142 (MQ=255) ggACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCctgctg > 7:201049/1‑149 (MQ=255) gACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCGGGCCctgctg < 5:337614/148‑1 (MQ=255) gACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTgg < 4:60107/149‑1 (MQ=255) aCGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGc < 8:153904/149‑1 (MQ=255) aaGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCaa < 7:97961/149‑1 (MQ=255) agagCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAt > 2:261939/1‑149 (MQ=255) gagCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggccggcc < 7:83346/136‑1 (MQ=255) gagCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggccggcc > 8:83346/1‑136 (MQ=255) gagCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAtc < 4:213963/149‑1 (MQ=255) cACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTcc < 4:257742/149‑1 (MQ=255) cGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCCGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAg > 8:63750/1‑149 (MQ=255) gCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGcc > 3:164417/1‑149 (MQ=255) tACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCg < 6:104130/149‑1 (MQ=255) aCTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGCTGGCCAATCTCCATCAGCCGTTCACCGt > 8:25011/1‑149 (MQ=255) aCTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCg < 3:124753/148‑1 (MQ=255) cTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGtt > 6:112301/1‑149 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCaa < 6:18663/126‑1 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCaa > 5:18663/1‑126 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCAc > 8:90252/1‑144 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCAc < 7:90252/144‑1 (MQ=255) aTACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGc < 6:306652/148‑1 (MQ=255) aTACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGc > 7:219600/1‑148 (MQ=255) aTACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGc < 6:311761/148‑1 (MQ=255) tACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGc > 2:341815/1‑147 (MQ=255) aCTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGGGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAtc > 3:328033/1‑124 (MQ=255) aCTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAAtc < 4:328033/124‑1 (MQ=255) gcTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGGTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTAc > 6:44265/1‑149 (MQ=255) tGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCg > 6:145482/1‑149 (MQ=255) tGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCg > 7:17206/1‑149 (MQ=255) cccAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTAtt > 3:173897/1‑149 (MQ=255) cccAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCACTCGTAGGAGCGGGTTTAGCCTCGAAGAGGCCGGCCGTGCTGGCCAATCTCCATCAGCAGTTCAACGTTGCCCGCGCTACCGTAtt > 4:28111/1‑149 (MQ=255) ccAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTc > 7:332026/1‑149 (MQ=255) ccAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTc > 6:70425/1‑149 (MQ=255) ccAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTc > 8:354174/1‑149 (MQ=255) ccAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTc > 8:122189/1‑149 (MQ=255) cAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTTCGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGGCAATCTCCATGAGGGGTTCACCGTTGCCAGCGCTACCGTATTcg > 3:345049/1‑149 (MQ=38) cAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTcg > 3:345048/1‑149 (MQ=255) aaaaaCCCGCCT‑CCCGGTCAGGGCAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTc > 2:193864/2‑148 (MQ=25) aCCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCggg < 8:219600/149‑1 (MQ=255) cccGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCgg > 2:141741/1‑147 (MQ=255) cccGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCgg < 1:141741/147‑1 (MQ=255) ccGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGt > 6:207538/1‑148 (MQ=255) ccGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGt > 2:343478/1‑148 (MQ=255) ccGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGt > 6:158693/1‑148 (MQ=255) ccGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGt > 7:257403/1‑148 (MQ=255) ccTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAAc < 4:173897/149‑1 (MQ=255) cTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAAcc < 4:164417/149‑1 (MQ=255) cccTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGc < 8:201049/149‑1 (MQ=255) tGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCAcc < 6:116725/111‑1 (MQ=255) tGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTc > 3:199590/1‑148 (MQ=255) agACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCAcc > 5:116725/2‑111 (MQ=255) | ACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGG‑AGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCGGGTAAACCCGCTC > NC_002947/447014‑447299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |