| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,988,362 | G→C | 7.0% | intergenic (+32/+62) | ycgR → / ← PP_4398 | flagellar brake protein YcgR/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,988,362 | 0 | G | C | 7.0% | 215.7 / 6.6 | 71 | intergenic (+32/+62) | ycgR/PP_4398 | flagellar brake protein YcgR/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base G (32/34); new base C (3/2); total (35/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.11e-01 | |||||||||||
CCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGCCTG > NC_002947/4988215‑4988510 | ccaccTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctgc > 5:233598/1‑149 (MQ=255) caccTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctgct < 1:8497/149‑1 (MQ=255) tttGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAgg > 1:281276/1‑149 (MQ=255) gcgtgcgtTTCCACAACCTGAGCGGGCAGGCTCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCAGGTGGCGtt < 2:279684/149‑1 (MQ=255) gcgtgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGtt > 3:323280/1‑149 (MQ=255) tgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑c < 3:161051/149‑1 (MQ=255) gcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑c < 4:178739/148‑1 (MQ=255) gtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAtt > 8:297727/1‑149 (MQ=255) gtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCAGGTGGCGTTTT‑ctgt < 7:138576/149‑4 (MQ=255) ggttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGAGCGAGAGGTTCGTGTACCAGCTGCAGCGTGTGGCGCGGCGGTTCGACAAGGACGAGTATTGATCGGCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAtt < 8:267351/147‑1 (MQ=255) tttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCg > 3:143857/1‑140 (MQ=255) tttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCg < 4:143857/140‑1 (MQ=255) tttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAttt < 4:96584/149‑1 (MQ=255) ttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTtg > 6:131099/1‑149 (MQ=255) cacaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTgtgt > 3:198295/1‑149 (MQ=255) acaACCTGAGCGGGCTGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAttt < 7:77364/144‑1 (MQ=255) acaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAttt > 8:77364/1‑144 (MQ=255) acaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGtt > 7:43694/1‑149 (MQ=255) caACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAttt < 1:18744/143‑1 (MQ=255) caACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CAttt > 2:18744/1‑143 (MQ=255) aCCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctgct > 1:19373/1‑123 (MQ=255) aCCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctgct < 2:19373/123‑1 (MQ=255) ccTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTctg > 8:137657/1‑149 (MQ=255) ccTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTctg < 4:198295/149‑1 (MQ=255) ccTGAGCGGGCAGGCGCAGCGCAACATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTctg > 7:143745/1‑149 (MQ=255) aGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGtttt < 6:11176/124‑1 (MQ=255) aGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGtttt > 5:11176/1‑124 (MQ=255) aGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGcc > 5:217320/1‑149 (MQ=255) aGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGcc > 4:161922/1‑149 (MQ=255) gcgcagcgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGAGTGAGGCGCGGCGGTTCGACAAGGAAGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGc > 4:95267/1‑149 (MQ=255) agcgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTcg > 5:65233/1‑149 (MQ=255) gcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCgg < 1:152595/149‑1 (MQ=255) gcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCgg < 3:161922/149‑1 (MQ=255) ctaaGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCgg < 5:103385/147‑1 (MQ=255) aGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCgg > 6:103385/1‑146 (MQ=255) aTCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctgct < 2:339965/97‑1 (MQ=255) aTCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctgct > 1:339965/1‑97 (MQ=255) tCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAAc < 6:65233/149‑1 (MQ=255) gTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTc < 7:137657/149‑1 (MQ=255) tACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACAcc > 1:261876/1‑148 (MQ=255) tACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACAcc > 5:71466/1‑148 (MQ=255) ccAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGa < 7:297727/148‑1 (MQ=255) ccAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAc < 7:263318/149‑1 (MQ=255) aGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCATCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACtt < 3:113344/149‑1 (MQ=255) gCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTc > 5:13999/1‑133 (MQ=255) gCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTc < 6:13999/133‑1 (MQ=255) cAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCt < 2:281276/147‑1 (MQ=255) gCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGAc > 6:256782/1‑148 (MQ=255) ggCGCGGCGGTTCGACAAGGACGATTTTTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGTGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCa < 8:280888/149‑1 (MQ=255) gcggcgGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGgc > 4:19686/1‑149 (MQ=255) gcggcgGTTCGACAAGGAAGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGgc < 3:95267/149‑1 (MQ=255) cggcggTTCGAAAAGGAAGATTATAGATAGTAGGTCGGTAAAAAAGAAAACGCCACCTGCTGAGGTGTCGTTTT‑CATTTGTGTTTCTGCTGGGCTCGCCGCTTCGCGGGTAAACCCGCTACTACACATACTTGCTGACCTCTTCAGccg > 6:324717/1‑149 (MQ=255) cGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtg < 6:71466/148‑1 (MQ=255) cGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtg < 3:178177/148‑1 (MQ=255) aCAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGTTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGa < 1:262158/127‑1 (MQ=255) aCAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTTCACCGACTTGCTGACCTCTTCAGGCGCCTGTtgctg > 4:179562/1‑149 (MQ=255) aCAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGa > 2:262158/1‑127 (MQ=255) accgACGATCAATAATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGtt < 5:98018/140‑1 (MQ=255) accgACGATCAATAATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGtt > 6:98018/4‑143 (MQ=255) ggACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGAcc > 6:354459/1‑125 (MQ=255) cgACGATCAATAATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTgcgcg > 8:276657/2‑149 (MQ=255) gACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTgcgcgc < 6:217320/149‑1 (MQ=255) cGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGccc < 3:19686/149‑1 (MQ=255) gATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCt < 8:251039/101‑1 (MQ=255) aTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTc < 4:323280/148‑1 (MQ=255) aTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCa < 8:143745/149‑1 (MQ=255) tcgtcgGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTtctc < 2:249987/144‑1 (MQ=255) tcgtcgGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTtctc > 1:249987/1‑144 (MQ=255) gtcggtcgGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTGCTACCCCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATcc < 7:135121/149‑1 (MQ=255) ggtAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGgtgt > 6:167365/1‑149 (MQ=255) tAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCt < 5:167365/149‑1 (MQ=255) aCAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCTCCCTTCTCTTCATCCTCGGTGTCTTCAg < 5:131099/149‑1 (MQ=255) aGAAAACGCCACCTGCTGAGGTGGCGTTTTCCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAgc > 1:34620/1‑149 (MQ=255) aGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTATGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAgcc > 1:55887/1‑149 (MQ=255) gAAAACGCCACCTCAGCAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAgccg > 7:21224/1‑149 (MQ=255) gAAAACGCCACCTCAGCAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGAGTCTTCAgccg > 4:263411/1‑149 (MQ=255) aaaCGCCACCTCAGCAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAgccgc > 7:200890/1‑148 (MQ=255) ctgctgAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGcc < 7:276657/149‑1 (MQ=255) gctgAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGCCTg > 4:7874/1‑149 (MQ=255) | CCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT‑CATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGCCTG > NC_002947/4988215‑4988510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |