| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,041,249 | T→A | 6.1% | intergenic (+227/‑435) | PP_5680 → / → PP_4447 | Cro/CI family transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,041,249 | 0 | T | A | 6.1% | 216.3 / 2.9 | 77 | intergenic (+227/‑435) | PP_5680/PP_4447 | Cro/CI family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (35/37); new base A (3/2); total (38/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-01 | |||||||||||
GATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCATT > NC_002947/5041109‑5041396 | gATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCgg > 4:349724/1‑149 (MQ=255)gATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCg < 2:346082/148‑1 (MQ=255) aTCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGt > 7:292132/1‑149 (MQ=255) aTCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGACCAAGACCCCTAACCGCCATATGGCGGt > 3:50572/1‑149 (MQ=255) agagGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTct‑ct < 6:292098/149‑1 (MQ=255) gagGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGttaggggt < 1:56871/149‑7 (MQ=255) gagGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTg > 5:379180/1‑149 (MQ=255) gagGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttaggggt < 2:309078/149‑7 (MQ=255) gggATAGACTTAATGCGTAATTGTCTGATACCAACACCTCAGCGATGAGGACATGACCTCTTCATCGGCGCGACTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCCCCTTATGGCGGTTTCT‑CTGCCTCCCa < 6:255100/148‑1 (MQ=255) ggATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTcc < 6:276924/145‑1 (MQ=255) ggATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTcc > 5:276924/1‑145 (MQ=255) gATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTc < 8:50651/149‑1 (MQ=255) aTAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGGGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTct > 8:134378/1‑149 (MQ=255) cTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttaggg > 5:87076/1‑127 (MQ=255) cTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCATAAGGCGGttaggg < 6:87076/131‑5 (MQ=255) gCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGc > 6:183057/1‑149 (MQ=255) gTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGT‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCTCCTGCCTCCCAGTCTGCTGCGAAGGcc < 1:197119/149‑1 (MQ=255) aTTGTCTGATACCAACACCGCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATa < 6:301952/149‑1 (MQ=255) gTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCACGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCATAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAATGCCGATAGcc > 1:280297/1‑149 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac > 4:340464/1‑149 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac > 4:346122/1‑149 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac < 7:68340/149‑1 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTACTGCGAAGGCCGATAGCCGAGTccaac > 3:333610/1‑149 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTAT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac > 7:282822/1‑149 (MQ=255) cAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCCCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAAACGCCTTATGGCGCTTTAT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGAAACCCGAGTccaac > 7:68809/1‑149 (MQ=255) aaCACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaacc < 8:292132/149‑1 (MQ=255) aaCACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac > 1:139759/1‑148 (MQ=255) acacCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac > 6:136393/1‑147 (MQ=255) acacCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTccaac < 5:136393/147‑1 (MQ=255) tctGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTtct‑c < 2:334080/101‑1 (MQ=255) tctGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTtct‑c > 1:334080/1‑101 (MQ=255) tctGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCGCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTc > 5:319629/1‑148 (MQ=255) tctGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTc > 1:381023/1‑148 (MQ=255) gAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTc > 8:278656/1‑148 (MQ=255) gAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTc > 4:101112/1‑148 (MQ=255) catttccTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGACTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTTCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTg < 8:68809/144‑1 (MQ=255) aTGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTgg > 1:219536/1‑149 (MQ=255) tggctctTC‑TCGGCGGGCTTAAGGCGCGCCGATGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGc < 6:95530/106‑1 (MQ=25) tggctctTC‑TCGGCGGGCTTAAGGCGCGCCGATGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGc > 5:95530/4‑109 (MQ=25) tggctctTC‑TCGGCGGGCTTAAGGCGCGCCGATGAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGcc > 2:9647/4‑149 (MQ=38) ctctTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGa > 1:153947/1‑149 (MQ=255) cATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCg > 4:136920/1‑147 (MQ=255) aTCGGCGCTCCTTAAGCACGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGCCCCCTAACCGCCTTATGGCGGTATCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAg < 4:233283/149‑1 (MQ=255) aTCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAg > 3:339556/1‑149 (MQ=255) gcgcgcCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTa > 6:107461/1‑147 (MQ=255) aaGCCCGCCGA‑GAAGAGTCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGtgtg < 6:124179/147‑1 (MQ=255) aaGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGtgtg < 5:183057/147‑1 (MQ=255) aaGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTACTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGtgtg < 4:333610/147‑1 (MQ=255) gCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTAt < 3:133055/149‑1 (MQ=255) cccGCCGA‑GAAGAGCCAGAGACCCCGGGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTTCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATc < 7:134378/149‑1 (MQ=255) ccgccgA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCa < 2:139759/149‑1 (MQ=255) ccgA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCagag < 7:278656/149‑1 (MQ=255) ccgA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCa > 3:109984/1‑146 (MQ=255) ga‑gaAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGaa < 3:136920/149‑1 (MQ=255) gaagaGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGaaaa < 6:379180/149‑1 (MQ=255) gagCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTg < 3:346122/149‑1 (MQ=255) gagCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTg > 3:11305/1‑149 (MQ=255) gCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTgg < 2:219536/148‑1 (MQ=255) gCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGt < 4:339556/149‑1 (MQ=255) ccAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGt < 3:142128/145‑1 (MQ=255) ccAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGt > 4:142128/1‑145 (MQ=255) ccAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTa < 4:109984/149‑1 (MQ=255) ccAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTa < 5:107461/149‑1 (MQ=255) ccGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCa < 2:381023/149‑1 (MQ=255) gAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGc < 3:340464/149‑1 (MQ=255) gAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGc < 3:101112/149‑1 (MQ=255) aCCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTg < 7:12183/128‑1 (MQ=255) aCCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTg > 8:12183/1‑128 (MQ=255) aCCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCAc < 4:11305/149‑1 (MQ=255) agagaaaCCGCCATAAGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCAcc > 7:349236/6‑149 (MQ=255) cccTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCAcc > 4:214270/1‑148 (MQ=255) ccGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGt > 3:160836/1‑149 (MQ=255) cGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACGTGGCCTGACCGGAGGAGAGCGTGTGCTATCAGAGAAAAGAGGTATCAATATCAGCCCCCCACCGAAAAGt > 1:119921/1‑148 (MQ=255) cGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGt > 1:249170/1‑148 (MQ=255) gCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCa < 2:153947/149‑1 (MQ=255) ccTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAat > 4:348177/1‑125 (MQ=255) cTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCAtt < 2:101456/149‑1 (MQ=255) | GATCCACAGAGGGTTAGGGATAGCCTTAAGGCGTAATTGTCTGATACCAACACCTCTGCGATGAGGACATGACCTCTTCATCGGCGCGCCTTAAGCCCGCCGA‑GAAGAGCCAGAGACCCCGAGCAAGACCCCTAACCGCCTTATGGCGGTTTCT‑CTGCCTCCCAGTCTGCTGCGAAGGCCGATAGCCGAGTCCAACCAATTCTATTTTTCGACCTGGCCTGACCGCAGTAGAGCGTGTGCTATCAGAGAAAAGTGGTATCAATATCAGCCCCCCACCGAAAAGTCATT > NC_002947/5041109‑5041396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |