| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,077,237 | A→C | 9.1% | intergenic (+32/+76) | PP_4470 → / ← mgtE | Arc domain‑containing transcriptional regulator/magnesium transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,077,237 | 0 | A | C | 9.1% | 216.3 / 10.3 | 74 | intergenic (+32/+76) | PP_4470/mgtE | Arc domain‑containing transcriptional regulator/magnesium transporter |
| Reads supporting (aligned to +/- strand): ref base A (28/39); new base C (3/4); total (31/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTCGGTCACAGCAGT > NC_002947/5077094‑5077378 | ccTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTgg > 8:130690/1‑149 (MQ=255)ccTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTg < 4:64886/148‑1 (MQ=255) gCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCtt > 1:62382/1‑149 (MQ=255) cATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCttt < 6:168496/149‑1 (MQ=255) aTGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCtttt > 3:26543/1‑149 (MQ=255) aTGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCtttt < 3:207058/149‑1 (MQ=255) aGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCGCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGTGTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCtttttt < 6:346998/148‑1 (MQ=255) gcgcGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑TTACGCTGGCTTTTTcgt < 4:116861/149‑1 (MQ=255) gcgcGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGACAGCAGAACGCCTTGTTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGTCTGCAGCGAACACAAAAAAGCCAGC‑‑‑TTACGCTGGCTTTTTcgt < 8:355590/149‑1 (MQ=255) cgcgAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTtgtg < 3:154277/149‑1 (MQ=255) gAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGc < 3:109034/149‑1 (MQ=255) aGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCg > 7:272701/1‑149 (MQ=255) aGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTgg > 6:319881/1‑149 (MQ=255) aGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTgg < 2:62382/149‑1 (MQ=255) tcttttCCGCGAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGGCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTgg < 6:362900/145‑1 (MQ=255) ttCCGCCAACTGTCACACCGCCAGCAGAACGCCTTGGACGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGCCTGCAGCGAACACGAAAAAGCCACC‑‑‑GTAAGCTGGATTTTTTGTGGGCGTCTGACTgg > 5:362900/1‑144 (MQ=255) ccGCCAGCTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAg > 4:222945/1‑149 (MQ=255) cGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGGCGCAGACGCGTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGGTTTTTTGTGGGCGTCTGACTGGCAGCAAgg < 1:62985/149‑1 (MQ=255) ccAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGc > 6:265228/1‑148 (MQ=255) ccACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGCATGGGGAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTcc > 1:316030/1‑149 (MQ=255) ccACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCt < 1:1786/148‑1 (MQ=255) cACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGc > 8:196215/1‑149 (MQ=255) cACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGc > 5:84794/1‑149 (MQ=255) cACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGc < 1:12972/149‑1 (MQ=255) cACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACAAAAAAGCCAGC‑‑‑TTACGCTGGCt > 3:146476/1‑108 (MQ=255) cACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACAAAAAAGCCAGC‑‑‑TTACGCTGGCt < 4:146476/108‑1 (MQ=255) cACCCCCAGCTCAACGCCTT‑GTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCg < 8:221551/149‑1 (MQ=255) aCCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCg < 5:265228/149‑1 (MQ=255) cagcagAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGAtt < 6:84794/149‑1 (MQ=255) cagAACGCCTTGGTCTCCCTAATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACTAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCTGTATTGtt < 6:133488/149‑1 (MQ=255) aaCGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTcc > 1:74777/1‑148 (MQ=255) cGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCca > 7:179812/1‑148 (MQ=255) ccTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAg < 7:130690/149‑1 (MQ=255) cTTGGTCGCCCTCATCGCTCACGATGTGGATATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAgg > 1:33100/1‑149 (MQ=255) cTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAgg > 1:276662/1‑149 (MQ=255) ggTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGggag > 3:106554/1‑149 (MQ=255) cccTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTg < 4:106554/149‑1 (MQ=255) ccTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTgg < 8:272701/149‑1 (MQ=255) aTCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCg < 6:371429/120‑1 (MQ=255) aTCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCg > 5:371429/1‑120 (MQ=255) gATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGaa < 4:166657/149‑1 (MQ=255) gATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGaa < 4:91122/149‑1 (MQ=255) aTGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAAc < 2:33100/149‑1 (MQ=255) tgtgGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACa < 7:196215/149‑1 (MQ=255) gAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGt < 8:179812/149‑1 (MQ=255) aTGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTacaaca > 5:62739/1‑136 (MQ=255) aTGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTacaaca < 6:62739/136‑1 (MQ=255) aTGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGc < 2:74777/149‑1 (MQ=255) aTGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGc < 3:222945/149‑1 (MQ=255) ccGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGtt > 7:173483/1‑106 (MQ=255) ccGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGtt < 8:173483/106‑1 (MQ=255) cAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACt > 4:206413/1‑72 (MQ=255) cAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACt < 3:206413/72‑1 (MQ=255) cAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGccc > 4:360628/1‑148 (MQ=255) aGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGccc > 6:45575/1‑147 (MQ=255) aGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCaa < 3:366658/149‑1 (MQ=255) aCGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAg > 4:204949/1‑148 (MQ=255) gCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTacaa < 5:151059/122‑1 (MQ=255) gCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTacaa > 6:151059/1‑122 (MQ=255) gCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGaa < 3:360628/149‑1 (MQ=255) ctcctGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGa < 1:231088/149‑1 (MQ=255) ctcctGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGa < 6:194988/149‑1 (MQ=255) ctcctGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGa < 5:319881/149‑1 (MQ=255) ctGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATg < 2:281794/148‑1 (MQ=255) gCTGCAGCGATCACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAac < 3:288573/149‑1 (MQ=255) gAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTg > 1:299643/1‑149 (MQ=255) ccacaAAAAAGCCAGC‑‑‑TTACGCTGGCTTTTTCGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTc > 8:345259/2‑149 (MQ=255) gAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAgg < 1:44335/101‑1 (MQ=255) gAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAgg > 2:44335/1‑101 (MQ=255) aaaaaGCCAGC‑‑‑TTACGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTCGGTca > 7:182220/1‑149 (MQ=255) aaaaaGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTCGGTca < 2:276662/149‑1 (MQ=255) aaaaGCCAGC‑‑‑TTACGCTGGCTTTTTCGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTCGGTcac < 7:345259/149‑1 (MQ=255) gCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCATGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACAACCGCTGTCGCTCAcag > 8:203618/1‑147 (MQ=255) cAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTCGGTCACAGCAGt > 3:61132/1‑149 (MQ=255) | CCTGCATGAGCGCGAGTTGCTGCAGCGTTTCCGCCAACTGTCCCACCGCCAGCAGAACGCCTTGGTCGCCCTCATCGCTCACGATGTGGAAATGGCCGCAGACGCCTCCTGAGGGCTGCAGCGAACACGAAAAAGCCAGC‑‑‑GTAAGCTGGCTTTTTTGTGGGCGTCTGACTGGCAGCAAGGCCATTTCCCTGCGGGATTGTTCCCACAGGGAGGATTGGCTTACAACAGGAACAGCGTGGCCAGCCCAAGGAAGATGAAGAAACCACCGCTGTCGGTCACAGCAGT > NC_002947/5077094‑5077378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |