| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,256,375 | A→C | 5.3% | E53A (GAG→GCG) | PP_4633 → | DUF1244 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,256,375 | 0 | A | C | 5.3% | 272.3 / 4.3 | 88 | E53A (GAG→GCG) | PP_4633 | DUF1244 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (42/41); new base C (3/2); total (45/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.29e-01 | |||||||||||
CAGCAACAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGACCTGAATA > NC_002947/5256227‑5256522 | caGCAACAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGa < 5:250975/149‑1 (MQ=255) gCAACAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGc < 5:220229/149‑1 (MQ=255) aaCAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGGGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGTTACAAGGCCGCCGGTGACGAGCG‑t < 6:202845/149‑1 (MQ=255) aCAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGc < 2:70891/146‑1 (MQ=255) aCAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGc > 1:70891/1‑146 (MQ=255) aCAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑t > 7:145362/1‑148 (MQ=255) aCAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑t > 2:227287/1‑148 (MQ=255) agctcgagctcgAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAg < 2:242352/149‑1 (MQ=255) gctcgagctcgaGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGc > 5:134529/1‑149 (MQ=255) ctcgagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGCTCG‑TCAGcg < 3:164277/149‑2 (MQ=255) ctcgagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCt > 3:71392/1‑149 (MQ=255) ctcgagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCt < 4:71392/149‑1 (MQ=255) tcgagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTg > 6:67631/1‑149 (MQ=255) gagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGCTCG‑TCAGcggc < 7:113090/148‑4 (MQ=255) gagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGa < 6:134529/149‑1 (MQ=255) gagctcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGa > 8:329528/1‑149 (MQ=255) tcgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACCGGATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGCCCt > 1:283749/1‑149 (MQ=255) cgagGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGa < 7:329528/149‑1 (MQ=255) agGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGc < 5:59529/149‑1 (MQ=255) cgccgcGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGACGCTGACGAGAG‑TCAGCTGGCCCTGAGCCTg > 6:259109/1‑148 (MQ=255) gTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGatgatg < 7:17004/149‑1 (MQ=255) ccGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGccc > 2:96598/1‑149 (MQ=255) ggCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCGTTCAGCTGGACCTGAGCCTGGATGATGCCcg < 1:227287/149‑1 (MQ=255) ggCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGga < 1:14956/139‑1 (MQ=255) ggCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGga > 2:14956/1‑139 (MQ=255) tGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCg > 7:305169/1‑149 (MQ=255) gTCGAACACCTTCAAAAGCGCACC‑GATGTACATAACATCGACCTGATGAACCTGTCCGTTTTCTGCCGCAACTGCCTGTACAAGTGGTACAAGTCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCg < 4:132368/147‑1 (MQ=255) gTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCg < 4:268581/147‑1 (MQ=255) gTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGgt < 2:283749/149‑1 (MQ=255) cTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGgatgat < 5:128048/126‑1 (MQ=255) cTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGgatgat > 6:128048/1‑126 (MQ=255) cTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCAt < 8:305169/149‑1 (MQ=255) cTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCAt > 6:152753/1‑149 (MQ=255) cTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTACGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTCACGAGCG‑TCAGCTGGACCTGAGACTGGATGATGCCCGCGAAGCGGTGTACGGCAt > 8:318185/1‑149 (MQ=255) cAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATg < 7:314268/147‑1 (MQ=255) cAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGc < 5:152753/148‑1 (MQ=255) aaaaGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGaa > 8:132314/1‑131 (MQ=255) aaaaGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGaa < 7:132314/131‑1 (MQ=255) aGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATAc > 8:298681/1‑149 (MQ=255) cgcACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGc < 5:259109/149‑1 (MQ=255) gcACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGCGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGcc > 4:303351/1‑149 (MQ=255) c‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGTTACAAGGCCGCCGCTGCCGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGCTGTACGGCATGCCATACGCCGAGt > 3:84327/1‑149 (MQ=255) aCAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCAGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGGGGAAAg > 8:231347/1‑149 (MQ=255) gAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGcc > 6:110140/1‑148 (MQ=255) aTCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATa > 7:289837/1‑149 (MQ=255) aTCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGCTGTACGGCATGCCATACGCCGAGTGGAAAGACCaaaa > 8:241812/1‑147 (MQ=255) aCCTGATGTACCTGTCGGGTTTCTGCCGGAACTTCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGATCCTGGATGATGCCGGCGAATCGGTGTACGTCATGCCATACGCCGAGTGGAAAGCGCAATACCa < 4:56009/148‑1 (MQ=255) aCCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAg < 7:52553/131‑1 (MQ=255) aCCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAg > 8:52553/1‑131 (MQ=255) aCCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATAc > 5:63826/1‑146 (MQ=255) aCCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATAc > 5:265865/1‑146 (MQ=255) cTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCagaa < 7:298681/149‑1 (MQ=255) cTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCagaa < 6:63826/149‑1 (MQ=255) gatgaACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCaga > 2:28560/1‑146 (MQ=255) gaACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCagaaagaa < 7:241812/148‑1 (MQ=255) gaACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGACCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAaagaag > 5:79299/1‑149 (MQ=255) aCCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGCCGAGCG‑TCACGTGGCCGTGAGCCGGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCGGAGTGGAAAGACCAATACGAGAAAGCAGcc > 8:198742/1‑149 (MQ=255) aCCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGc > 2:143056/1‑148 (MQ=255) catGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTTGATGATACCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGGGGAAAGCCCAATAACAGAAAGAAGCCa > 5:286537/3‑149 (MQ=255) cGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCaa < 3:19388/127‑1 (MQ=255) cGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCaa > 4:19388/1‑127 (MQ=255) gTTTCTGCTGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGaa < 8:165817/149‑1 (MQ=255) gTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGaa < 8:145362/149‑1 (MQ=255) tttCTGCCGAAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGTTGGCCCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGaa > 2:2690/1‑148 (MQ=255) ccGCAACTGCCTGTCCAAGTGGTACACGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGaacaac < 2:297214/146‑1 (MQ=255) ccGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGTAAAGCCCAATACCAGAAAGAAGCCAGCGCCGaacaac < 1:96598/146‑1 (MQ=255) cGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAgc > 6:368932/1‑149 (MQ=255) ccTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCTTGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTc < 6:79299/148‑1 (MQ=255) ccTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTc < 5:67631/148‑1 (MQ=255) tCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGaaa > 3:316566/1‑148 (MQ=255) cAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TAAGGTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGAGCCGAACAACAAGCGGCGTTCGaaaaa < 7:318185/148‑1 (MQ=255) aaGTGGTACAAGGCCGCCGCTGACGAGCG‑GCAGCTGGCCCTGCGCCTGGATGATGCCCGCTAAGCGGTGTCCGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCAGAACAACAAGCGGAGTTCTCAAAAg > 3:200442/1‑148 (MQ=255) aGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGa < 7:193212/149‑1 (MQ=255) aCAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCt > 6:23098/1‑149 (MQ=255) aCAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCt > 2:348722/1‑149 (MQ=255) cAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAg < 5:308752/125‑1 (MQ=255) cAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAg > 6:308752/1‑125 (MQ=255) cAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTc < 5:23098/149‑1 (MQ=255) aaGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCg > 8:209553/1‑149 (MQ=255) aGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGt < 1:143056/149‑1 (MQ=255) gccgccGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGtga > 3:198410/1‑149 (MQ=255) cagcTGACGCTCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGGAAAAGGAAAACCTCGtgactga > 3:171916/3‑149 (MQ=255) cgcTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGtgactgac < 5:110140/149‑1 (MQ=255) cgcTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGtgactgac < 1:28560/149‑1 (MQ=255) gcTGACGCTCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGAcc > 7:75013/1‑149 (MQ=255) cGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGACCTGaa < 3:73676/148‑1 (MQ=255) gAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGACCTGAATa > 4:357778/1‑149 (MQ=255) gAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGACCTGAATa > 4:352069/1‑149 (MQ=255) gAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGACCTGAATa < 4:316566/149‑1 (MQ=255) | CAGCAACAGCTCGAGCTCGAGGCCGCCGCGTTCCGGCGCCTGGTCGAACACCTGCAAAAGCGCACC‑GATGTACAGAACATCGACCTGATGAACCTGTCCGGTTTCTGCCGCAACTGCCTGTCCAAGTGGTACAAGGCCGCCGCTGACGAGCG‑TCAGCTGGACCTGAGCCTGGATGATGCCCGCGAAGCGGTGTACGGCATGCCATACGCCGAGTGGAAAGCCCAATACCAGAAAGAAGCCAGCGCCGAACAACAAGCGGCGTTCGAAAAAGGAAAACCTCGTGACTGACCTGAATA > NC_002947/5256227‑5256522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |