| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,280,925 | T→C | 6.4% | intergenic (+58/+80) | trmA → / ← pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,280,925 | 0 | T | C | 6.4% | 233.5 / 3.6 | 78 | intergenic (+58/+80) | trmA/pcaG | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base T (31/42); new base C (3/2); total (34/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTT > NC_002947/5280777‑5281070 | ggACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACAtt > 7:337342/1‑149 (MQ=255) acccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATc < 1:357242/149‑1 (MQ=255) cccagcGCATAGAGCGCTGTGCATTGTTTGACCAGTTCCGTTATACCCACCATATGGAGAGTGGTGTTCTGCTGGTTAGGCTCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCTCATTCGCGGGCAAGCCAGGTCCTACTTTTATCg < 4:140828/149‑1 (MQ=255) ccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATctg > 2:80888/1‑147 (MQ=255) ccaccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCgg > 8:154826/1‑149 (MQ=255) ccGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACAATGATCGGCGt > 4:231557/1‑149 (MQ=255) gCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCg < 8:95735/149‑1 (MQ=255) gCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCg < 3:119394/149‑1 (MQ=255) tCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGgtg < 6:296387/149‑1 (MQ=255) gAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGgtgt < 1:145241/148‑1 (MQ=255) aGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTAc > 3:292641/1‑149 (MQ=255) gctcTGTGCATTGTTTGACCAGTTCCCGTAAACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACg < 8:106323/146‑1 (MQ=255) cATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCAGCTCCGACATTTATAGGCGTCGGTGTAAGCAGATCGt > 7:196088/1‑149 (MQ=255) aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGTGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 3:342080/149‑1 (MQ=255) aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGTTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGTGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 5:105426/149‑1 (MQ=255) aTTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGTCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt > 5:205376/1‑149 (MQ=255) ttGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTg > 7:112913/1‑149 (MQ=255) tttGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg < 5:122507/149‑1 (MQ=255) tttGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg < 3:229779/149‑1 (MQ=255) ttGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAg < 3:231557/148‑1 (MQ=255) ccAGTTGCCGTATACCCACCATATGGAGTGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCg < 3:219406/149‑1 (MQ=255) ccAGTTCCCGTATACCCACCATATGGAGAGAGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGAAGCCCATTCGCGGGCAAGCCCGCACCGAAATTGATCGGCGTCGGTGTACGCAGATCGATGTAGGACCg > 4:219406/1‑149 (MQ=39) cAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg < 3:215285/149‑1 (MQ=255) cAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg > 3:116282/1‑149 (MQ=255) cAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg < 5:48034/149‑1 (MQ=255) cAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGATCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg > 1:72377/1‑149 (MQ=255) gTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGc < 3:288020/149‑1 (MQ=255) gTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATAGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGc > 3:58105/1‑149 (MQ=255) ttCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCCGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCt > 2:181785/1‑149 (MQ=255) cccGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCtt < 7:176612/148‑1 (MQ=17) gTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGccc > 3:329478/1‑149 (MQ=14) gTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGAAAGTTGTAGGAGCGGGCTTGccc > 1:375173/1‑149 (MQ=255) tataCCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCCGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCcg < 1:181785/149‑1 (MQ=255) cccACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCcgc < 8:287482/146‑1 (MQ=255) cccACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGaa < 4:292641/149‑1 (MQ=255) cccACCATAGGCAGAGGGGGGTTCTGCTGGTGCGGCGCTGATCGTTGTCTTCCCGGGGCGGCTTTGCAGCCCATTCGCGGCCAAGCCCGCTCCGACATTGATCGGCGGCGGGGTACCCAGATCGTTGTAGCAGCGGGCTTGCCCGCGaa < 2:375173/149‑1 (MQ=255) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAA‑t < 1:80888/149‑1 (MQ=14) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt < 6:144395/125‑1 (MQ=255) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGtt > 5:144395/1‑125 (MQ=255) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGCGCGGGCTTGCCCGCGAA‑t > 6:29734/1‑149 (MQ=255) ccaccaTATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCACCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGAAGGAGCGGCCTTGCCCGGGact > 8:284167/1‑147 (MQ=255) tatGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCg > 2:132415/1‑149 (MQ=255) gagaGGGGGGTTCTGCGGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCaga < 4:108173/149‑1 (MQ=255) agagTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGgt < 5:112473/100‑1 (MQ=255) agagTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGgt > 6:112473/1‑100 (MQ=255) gagTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCgg < 7:322988/123‑1 (MQ=255) ggTTCTGCTGGTTCGGCGGTTCTCGTTGTATTGCCGGGGGTGCTTTCCTGCCCTTTCGCGGGCAACCCCTCTCCTACATTGATCGGCGTCGGTGTACGAATTTCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGcccc < 4:58105/149‑1 (MQ=37) ctgGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGCAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCtt < 7:284167/148‑1 (MQ=255) ctgGTGCGGCGCTGCTCGTGGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTCATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGc < 3:256886/146‑1 (MQ=255) gATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGCGCGGCCCCAAGCTTCCCCTCAGAAGTCg > 7:198599/1‑149 (MQ=255) tCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGCCGGTGTACGCAGATCGTTGTATGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCgaa < 7:328211/149‑1 (MQ=255) tATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGt < 8:288708/81‑1 (MQ=255) tATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGt > 7:288708/1‑81 (MQ=255) aTTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAAGTGGGCCGCAGAGCGGCCCCAAGCTTCAcc < 1:28065/131‑1 (MQ=255) aTTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCAcc > 2:28065/1‑130 (MQ=255) ggggCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGGGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTcc < 4:116282/149‑1 (MQ=255) ggCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTcccc < 3:61476/149‑1 (MQ=255) tgctTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCGTCACCTCAGAAGTCGAAGAAGACGGGCTCCCCTTc > 5:271666/1‑149 (MQ=255) ctTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGGGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTc < 2:121782/147‑1 (MQ=255) gaaGCCAATTCGCGGGCAAGCCCGATCCGAATTTGATGGGCGTCGGTGTACGCAGATCGTTGTTGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCt < 6:205376/146‑1 (MQ=255) gCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCt > 5:116643/1‑148 (MQ=255) cccATTCGCGGGCAAGCCCGCTCCGACATTGACCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCGTCACCGCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATg > 5:287994/1‑149 (MQ=255) cctttCGGGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACg < 1:3812/124‑1 (MQ=255) ccATTCGCGGGCAAGCCCGCTCCGACATTTATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAACCTTCACCTCAGCAGTCGAAGAACACg > 2:3812/1‑127 (MQ=255) cATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAATTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCg > 6:163081/1‑149 (MQ=255) cATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCg > 7:199564/1‑149 (MQ=255) aTTCGCGGGCAAGTCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCgg < 1:132415/149‑1 (MQ=255) aTTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCgg < 5:163081/149‑1 (MQ=255) ttCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGa > 7:158982/1‑149 (MQ=255) cAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAg < 5:29734/149‑1 (MQ=255) aaGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGc > 5:51926/1‑149 (MQ=17) gCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGat > 3:338976/1‑139 (MQ=255) gCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGat < 4:338976/139‑1 (MQ=255) ccGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTa > 1:150107/1‑149 (MQ=255) tCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGa < 6:358105/125‑1 (MQ=255) tCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGa > 5:358105/1‑125 (MQ=255) cGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGcc < 6:116643/147‑1 (MQ=255) gACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTc < 2:72377/149‑1 (MQ=255) cATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCtt > 6:258395/1‑149 (MQ=255) | GGACACCCACCGCATCGAGCGCTGTGCATTGTTTGACCAGTTCCCGTATACCCACCATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAA‑TGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTT > NC_002947/5280777‑5281070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |