Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,289,590 G→C 5.9% L246V (CTC→GTC) ‡ PP_4663 ← transmembrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,289,5900GC 5.9% 267.5 / 4.6 83L246V (CTC→GTC) ‡PP_4663transmembrane protein
Reads supporting (aligned to +/- strand):  ref base G (43/35);  new base C (3/2);  total (46/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCGCGCTGGACGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAGGCATCCTGCCCG  >  NC_002947/5289443‑5289738
                                                                                                                                                   |                                                                                                                                                    
gCCGCGCTGGACGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAgg                                                                                                                                                     <  1:374787/149‑1 (MQ=255)
  cgcgCTGGACGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGggc                                                                                                                                                   >  4:258117/1‑149 (MQ=255)
   gcgcTGGACGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAggtac                                                                                                                                                  >  5:126306/1‑146 (MQ=255)
   gcgcTGGACGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGggcg                                                                                                                                                  <  6:25063/149‑1 (MQ=255)
    cgcTGGACGTGCACTCGGGCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGGTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGggcgg                                                                                                                                                 <  4:286380/149‑1 (MQ=255)
         gACGTGCTCTCGGCCCTTCCGCACATTGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCTCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCCTCGGCGGCCa                                                                                                                                              <  7:350023/147‑1 (MQ=255)
          aCGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGc                                                                                                                                           <  5:106212/149‑1 (MQ=255)
             tGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCCTCGGCGGCCacctgct                                                                                                                                        <  8:272939/149‑7 (MQ=255)
               cACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGAt                                                                                                                                       <  4:262559/148‑1 (MQ=255)
                aCTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGGCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATg                                                                                                                                      >  3:295323/1‑148 (MQ=255)
                 cTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGa                                                                                                                                     >  4:238768/1‑148 (MQ=255)
                  tcggcccTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGaa                                                                                                                                    >  7:260328‑M2/8‑148 (MQ=255)
                  tcggcccTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTAACTGGAGCGCGATTTCGAAATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCAGAGGGCGGCCAGCCCGATGaa                                                                                                                                    >  1:88831‑M2/8‑148 (MQ=255)
                    ggcccTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGaaaaa                                                                                                                                 <  1:212881‑M2/144‑1 (MQ=255)
                      cccTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAg                                                                                                                                >  4:173968‑M2/4‑148 (MQ=255)
                       ccTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGCGCGCGGTTTCGATATCCCGCGGGTGGACCTGCTCAGCGCTTCCTCCGCGAACCGTTGATCAGCAGGTGGCCGCCGCGGGCGGGCAGGCCGGTGAAAAAGc                                                                                                                               >  1:84075‑M2/3‑148 (MQ=255)
                       ccTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGc                                                                                                                               >  4:283014‑M2/3‑148 (MQ=255)
                        cTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCaa                                                                                                                             >  3:23626‑M2/2‑149 (MQ=255)
                         ttCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGc                                                                                                                                           <  4:116265/134‑1 (MQ=255)
                         ttCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGc                                                                                                                                           <  4:196477/134‑1 (MQ=255)
                         ttCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGc                                                                                                                                           >  3:196477/1‑134 (MQ=255)
                         ttCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGc                                                                                                                                           >  3:116265/1‑134 (MQ=255)
                           ccGCACTTGGCCGCCTTCTTCTAAAAGCGATTGTAATACCTGGAGCGCTTTTTCTATATCCAGGGGGTCTACTTGCTCAGCGCTTCGTCCGAAAACCTTTTATCAGCTGGTGCCCGCCGTGGGCGGCCAGGCCGATGAAAAAGCAACg                                                                                                                           <  4:370852/148‑1 (MQ=255)
                             gCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCtt                                                                                                                        <  3:283014/149‑1 (MQ=255)
                             gCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCtt                                                                                                                        >  4:337350/1‑149 (MQ=255)
                             gCACATGCCCGCCTTCTTCGAAAACCGCATGCACTACCGGGAGCGCGATTGCGATACCCAGCGGGTCGACATGCACCGCGCGCCGCCCGCTAACCTTTTCACACCAGGTGGCCCCCGCGGGCGGCCAGGCCGATGAAAAAGCAACGCtt                                                                                                                        <  4:312781/149‑1 (MQ=255)
                                caTGGCCGCCTTCTTCTAAACGCGCAGGGACTACCTGGAGCGCGATTTCTATATCCAGCGGGTCGACATGCTCAGCGCTTCGCCCGCAAACCGTTGATCAGCAGGGGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGaa                                                                                                                     <  8:774/149‑1 (MQ=255)
                                  tGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAAca                                                                                                                   <  4:37697/149‑1 (MQ=255)
                                    gccgccTTCTTCTAAACGCGCTTGCACTAGCTGGCGCGGTATTTCTATATCCGGCGGGTCGACATGCTCCGCGCTTCGCCCGCTAACCTTTTATCCGCCGGGGGCCGCCGCGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAAcag                                                                                                                  <  8:50434/148‑1 (MQ=255)
                                    gccgccTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAAcag                                                                                                                  >  4:174727/1‑148 (MQ=255)
                                         cttcttCGAAAAGCGCATGGACTACCTGCAGCGCGATTTCTATATCCACCGGGTCGACATGCTCAGCGCTGCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAgcgc                                                                                                            <  2:84075/149‑1 (MQ=255)
                                          ttcttcGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAgcgcg                                                                                                           >  7:8374/1‑149 (MQ=255)
                                            gttcTAAAAGCCCTTGGACTACGTGTAGCGCTTTTTCTATATCCAGGGGGTCGACATGCTCAGCGCTTCGTCCGCTAACGTTTTATAAGCAGGTGGCCGCCTTGGGGGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAgcgcgc                                                                                                          <  4:175018/147‑1 (MQ=255)
                                                gAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATc                                                                                                     >  5:10121/1‑149 (MQ=255)
                                                gAAAAGCGCATGGACAACCTGGAGCGCGATTTCGAAATCCAGCGGGTCGACATGCTCACCGCTTCGTACGCTAACCGTTGAACAGCAGGTGGCCGCCGAGGCCGGCCAGGCCGAAGAAAAACAAAAGCATCAACAGCAGCGCCCTGATc                                                                                                     >  7:319083/1‑149 (MQ=255)
                                                          tgcaCTACCTGGAGCGCGATTTCTATATCACGCGGGTCGACATGCGCAGCGCTTCGTCCGCTAACCGTTGATCAGCCGGTGGCCGCCTAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCa                                                                                           <  7:49639/146‑1 (MQ=255)
                                                              cTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAgg                                                                                                                                                     <  1:47537/87‑1 (MQ=255)
                                                              cTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAgg                                                                                                                                                     >  2:47537/1‑87 (MQ=255)
                                                              cTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCa                                                                                       >  3:89110/1‑149 (MQ=255)
                                                                 ccaggAGCGCGATTTCGATATCCAGCGGGACCACATCCACAGCGCATCGTCAGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACTCAAGAACAGCAGCGCGCTGATACGCTCACGCAGCCACTg                                                                                    >  4:361754/4‑149 (MQ=255)
                                                                 ccTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTg                                                                                    >  6:325933/1‑149 (MQ=255)
                                                                  cTGGAGCGCTATTTCTATATCCTGCGGGTCGACATGCTCCGCGCTTGGTCCGCTAACCGTTGAGCAGCTGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTgg                                                                                   <  4:295323/149‑1 (MQ=255)
                                                                   tGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGc                                                                                  >  2:134720/1‑149 (MQ=255)
                                                                     gAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGc                                                                                  <  5:325933/147‑1 (MQ=255)
                                                                       gcgcGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCAGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGc                                                                              >  5:156896/1‑149 (MQ=255)
                                                                         gcgATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCa                                                                            <  7:355052/149‑1 (MQ=255)
                                                                          cgATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAg                                                                           >  8:340877/1‑149 (MQ=255)
                                                                             tttCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCAt                                                                        >  4:275034/1‑149 (MQ=255)
                                                                              ttCGATATCCAGCGGGTCGAAATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCAt                                                                        <  3:213898/148‑1 (MQ=255)
                                                                                 gATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTg                                                                                                >  2:71904/1‑121 (MQ=255)
                                                                                       cAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCaa                                                               <  8:8374/148‑1 (MQ=255)
                                                                                       cAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACAGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAg                                                              >  5:46270/1‑149 (MQ=255)
                                                                                        aGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAgg                                                             >  4:178151/1‑149 (MQ=255)
                                                                                            ggTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCgg                                                         >  7:332258/1‑149 (MQ=255)
                                                                                             gTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGgc                                                        <  7:1482/149‑1 (MQ=255)
                                                                                                  cATGCTCAGCGCTTCGGCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAg                                                   <  8:260328/149‑1 (MQ=255)
                                                                                                           cgcTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATcagcag                                          <  3:238768/149‑1 (MQ=255)
                                                                                                            gcTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGTGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCagcagc                                         <  4:89110/149‑1 (MQ=255)
                                                                                                            gcTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCagcagc                                         <  3:258117/149‑1 (MQ=255)
                                                                                                              ttCGTGCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGa                                       >  7:340055/1‑149 (MQ=255)
                                                                                                                cGTCCGCTAACCGTTTATCCGCTGGTGGCCGCCGTGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGAc                                      <  4:23626/148‑1 (MQ=255)
                                                                                                                   ccGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGTCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGccc                                  >  4:138696/1‑149 (MQ=255)
                                                                                                                    cGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGcccc                                 >  2:269670/1‑149 (MQ=255)
                                                                                                                     gCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGcccc                                 >  2:339327/1‑148 (MQ=255)
                                                                                                                      cTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCa                               >  2:316065/1‑149 (MQ=255)
                                                                                                                       tAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAg                              >  1:77076/1‑149 (MQ=255)
                                                                                                                           cGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGcc                          >  5:80428/1‑149 (MQ=255)
                                                                                                                            gTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGccccctaggcct                         >  5:94284/1‑142 (MQ=255)
                                                                                                                            aacggttagcagGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAGCGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCt                         >  6:17908/8‑149 (MQ=255)
                                                                                                                             ttGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCa                                                    >  5:276188/1‑121 (MQ=255)
                                                                                                                             ttGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCa                                                    <  6:276188/121‑1 (MQ=255)
                                                                                                                                aTCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCATCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGc                      <  6:80428/148‑1 (MQ=255)
                                                                                                                                 tCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCa                    <  3:173968/149‑1 (MQ=255)
                                                                                                                                 tCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCCGGCCa                    <  7:340877/149‑1 (MQ=255)
                                                                                                                                   tcggcctGGCCGCCCTCGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCAcc                  >  7:74000/7‑149 (MQ=255)
                                                                                                                                     cagGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCa                                                    <  6:708/113‑1 (MQ=255)
                                                                                                                                     cagGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCa                                                    >  5:708/1‑113 (MQ=255)
                                                                                                                                     cagGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCAccc                 >  2:115542/1‑148 (MQ=255)
                                                                                                                                      agGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAGCGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCaa               <  5:17908/149‑1 (MQ=255)
                                                                                                                                       gggggCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCTACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAg              <  2:88831/146‑1 (MQ=255)
                                                                                                                                        gTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAg                                                              <  4:334159/100‑1 (MQ=255)
                                                                                                                                        gTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAg                                                              >  3:334159/1‑100 (MQ=255)
                                                                                                                                        ctGGCCGCCCTCGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAgg             >  3:349900/2‑149 (MQ=255)
                                                                                                                                         tGGCCGCCCTCGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGCCGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAgg             >  6:206626/1‑148 (MQ=255)
                                                                                                                                             cgccgAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCCCCCAAGGCATcc        >  7:1648/1‑149 (MQ=255)
                                                                                                                                               ccgAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAGGCATCCTg      >  4:140005/1‑149 (MQ=255)
                                                                                                                                                cgAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGACCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAGGCATCCTGc     >  3:41230/1‑149 (MQ=255)
                                                                                                                                                   gggCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGACCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAGGCATCCTGCCCg  <  4:41230/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GCCGCGCTGGACGTGCACTCGGCCCTTCCGCACATGGCCGCCTTCTTCGAAAAGCGCATGGACTACCTGGAGCGCGATTTCGATATCCAGCGGGTCGACATGCTCAGCGCTTCGTCCGCTAACCGTTGATCAGCAGGTGGCCGCCGAGGGCGGCCAGGCCGATGAAAAAGCAACGCTTGAACAGCAGCGCGCTGATCCGCTGACGCAGCCACTGGCCCGCCAGCATGCCGAGCAAGGCCGGCGCCAGCATCAGCAGCGACGCCCCCAGCGCCTGGCCACCCAAGGCATCCTGCCCG  >  NC_002947/5289443‑5289738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑