Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,359,494 | G→A | 100% | S259L (TCG→TTG) | nusA ← | transcription termination/antitermination factor L |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,359,494 | 0 | G | A | 98.3% | 187.7 / ‑4.6 | 58 | S259L (TCG→TTG) | nusA | transcription termination/antitermination factor L |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (29/28); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACTTCAATGCGG > NC_002947/5359358‑5359637 | ggCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGc < 7:199770/149‑1 (MQ=255) cTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGTGTGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGAt > 1:268711/1‑149 (MQ=255) atcaACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAg < 7:169693/148‑1 (MQ=255) atcaACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAg < 3:333027/148‑1 (MQ=255) atcaACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCAGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAgg > 1:103259/1‑149 (MQ=255) tcaACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGc > 5:244283/1‑149 (MQ=255) caACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGc > 6:324215/1‑144 (MQ=255) caACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGc < 5:324215/144‑1 (MQ=255) aaCGATGATCGCCGCGACTTCAGCCGGCGACAAGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCAc > 1:46667/1‑149 (MQ=255) atCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCgg < 3:183293/149‑1 (MQ=255) tCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCggg > 5:84244/1‑149 (MQ=255) tCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCgg < 7:182276/148‑1 (MQ=255) gcgACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGa > 6:323545/1‑148 (MQ=255) cgtCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGc < 4:103563/147‑1 (MQ=255) cTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGc < 4:199376/149‑1 (MQ=255) ttCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCt > 6:352950/1‑149 (MQ=255) cgtgccGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTc < 2:153870/144‑1 (MQ=255) aCATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAg < 7:45801/149‑1 (MQ=255) t‑tGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACgg > 8:69858/1‑148 (MQ=255) gaCGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCt > 6:274282/1‑149 (MQ=255) aCGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCtt < 2:219078/149‑1 (MQ=255) cGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTg < 2:180705/149‑1 (MQ=255) aCTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCt > 6:202670/1‑149 (MQ=255) tGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTcg > 3:79585/1‑149 (MQ=255) gcCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTcgcg > 7:322185/1‑148 (MQ=255) gggTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑cc < 7:23344/149‑1 (MQ=255) tCGTCCCAAAGGACGATATCCCCACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGGATGCCGATGCAGGCACCTTGCGGGTCGATACCCTTGCCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGAt > 2:310336/1‑148 (MQ=255) tCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACg > 1:232755/1‑149 (MQ=255) aaaGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACggg > 5:175455/1‑147 (MQ=255) aaaGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGaa < 2:268711/149‑1 (MQ=255) aaGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAag > 5:237312/1‑149 (MQ=255) ggACTATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAATCCACGCATGCCGATGAAGGCACGTTGCGGTTCTATACGCTTGTCCGTGGATCGGACGGCAATCTTGGCTCTCGAA‑CCCGGCTGACGTGAag > 8:192331/1‑147 (MQ=255) gACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAagcag > 8:202706/1‑149 (MQ=255) gACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAagcag > 5:333102/1‑149 (MQ=255) cGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGcc < 3:166251/149‑1 (MQ=255) atatCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCAt < 2:114621/149‑1 (MQ=255) tCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGAc < 6:84244/149‑1 (MQ=255) ccACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACt > 5:94877/1‑149 (MQ=255) cGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGAt < 2:103259/149‑1 (MQ=255) gCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGAt > 4:245738/1‑148 (MQ=255) gCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGAt < 3:245738/148‑1 (MQ=255) gCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATg < 5:323545/149‑1 (MQ=255) cTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGa < 5:274282/149‑1 (MQ=255) accaccCAGCTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAg < 5:202670/147‑1 (MQ=255) cTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAACCCCGGATCACGGGAAGCAGCCATGACTTCGAt < 1:225907/136‑1 (MQ=255) cTCCCCGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGAt > 2:225907/1‑135 (MQ=255) cccGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAAttt > 3:223703/1‑149 (MQ=255) cGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTcc < 5:352950/149‑1 (MQ=255) cGGATACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTcc < 8:322185/149‑1 (MQ=255) aTACGGCCTGGTCGCGCAATCCACGCATGCCGATGCAGGCTCCTTGCGGGGCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCTGCCATGACt < 4:93251/122‑1 (MQ=255) aTACGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACt > 3:93251/1‑122 (MQ=255) aCGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCAc > 6:341207/1‑149 (MQ=255) aCGGCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCAc > 2:316675/1‑149 (MQ=255) ggCCTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACt > 6:52609/1‑148 (MQ=255) cTGGACGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACTTCaa > 1:339131/1‑149 (MQ=255) ggACGCGCAAACCACGCATGCCGAGGCAGGCACCTTCCGGGTCGATACGGTAGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGCA‑CCCGGATCCCGGGAAGCAGGCATGACTTGGATGAGGCCCTCGGCAATTTCCGGCCCTTCACTg > 8:222876/1‑149 (MQ=255) gACGCGCAAACCACGCATGCAGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTTGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACTGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACTTCAATGc < 4:233313/149‑1 (MQ=255) aCGCGCAAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACTTCAATGCg < 2:46667/149‑1 (MQ=255) cgcgcaAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACTTCAATGCgg < 6:175455/149‑1 (MQ=255) | GGCATCTTCATCAACGATGATCGCCGCGACTTCAGCCGGCGACATGGCGT‑TGATGACGAACTGCGCCGGGTTATCGTCCCAAAGGACGATATCCACACGCTCACCACCCAGCTCCCCGGATACGGCCTGGACGCGCGAACCACGCATGCCGATGCAGGCACCTTGCGGGTCGATACGCTTGTCCTTGGAGCGGACGGCAATCTTGGCTCGCGAA‑CCCGGATCACGGGAAGCAGCCATGACTTCGATGAGGCCCTCGGCAATTTCCGGCACTTCAATGCGG > NC_002947/5359358‑5359637 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |