| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,566,416 | T→A | 6.7% | Q357L (CAG→CTG) | mutL ← | DNA mismatch repair protein MutL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,566,416 | 0 | T | A | 6.7% | 248.0 / 4.4 | 84 | Q357L (CAG→CTG) | mutL | DNA mismatch repair protein MutL |
| Reads supporting (aligned to +/- strand): ref base T (35/43); new base A (4/2); total (39/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG > NC_002947/5566268‑5566564 | cAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGGATTTCACCCTGGGGCCCGAACTCACCGGC‑ctgct < 6:198418/149‑1 (MQ=255) aGCGGCTGCGTGGGAAGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACAATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCCAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑ctgctg < 7:257949/149‑1 (MQ=255) cGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGt < 5:198417/147‑1 (MQ=255) cGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTgg < 5:123011/149‑1 (MQ=255) cGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTg < 8:114637/148‑1 (MQ=255) cGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACCCACCGGC‑CAGCAGGCCGGTga < 5:366593/149‑2 (MQ=255) cGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCAATGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTg < 8:293066/148‑1 (MQ=255) gAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTggg > 3:34890/1‑149 (MQ=255) aGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTgggg < 4:185933/149‑1 (MQ=255) ggACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACCCACCGGC‑CAGCAGGCCGGTgagttc < 2:96902/149‑6 (MQ=255) aCGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGaa < 8:92308/149‑1 (MQ=255) cGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTCCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAAc < 1:83084/149‑1 (MQ=255) ggggTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCCGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAg > 6:338303/1‑149 (MQ=255) gtATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAg > 7:13607/1‑149 (MQ=255) tATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAg < 6:198740/148‑1 (MQ=255) tATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAg < 2:109080/148‑1 (MQ=255) aTTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAgg < 4:59719/148‑1 (MQ=255) ttGATACTGGTAACCGGCTCCGATGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGt < 6:261184/148‑1 (MQ=255) gATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAATCACCGGCGATGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTAc < 6:94144/148‑1 (MQ=255) gATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTAc < 1:176660/148‑1 (MQ=255) aTACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACgg < 6:175359/149‑1 (MQ=255) tACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCAGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACgg > 6:330781/1‑148 (MQ=255) cTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGgca < 6:245464/148‑1 (MQ=255) tGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGgcag > 4:135782/1‑148 (MQ=255) gTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGgcagca < 4:99243/148‑1 (MQ=255) aaCCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGt > 3:358780/1‑149 (MQ=255) cGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCg > 4:61248/1‑149 (MQ=255) cGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCg > 6:358260/1‑149 (MQ=255) cGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCg > 6:284613/1‑149 (MQ=255) ggCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCgg > 7:42572/1‑149 (MQ=255) gcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTgg < 7:293912/110‑1 (MQ=255) gcTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTgg > 8:293912/1‑110 (MQ=255) cTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTg > 7:324267/1‑149 (MQ=255) cTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTg < 3:61248/149‑1 (MQ=255) accaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCtt < 4:358780/149‑1 (MQ=255) accaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCtt > 6:202483/1‑149 (MQ=255) accaTTGGAAAACGACTGATGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTAACCCTGGGGCCCCAACTCACAGTC‑CTCCAGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGAGCGCCCAGCTCGACtt > 2:374374/1‑149 (MQ=255) aTTGGAAAACGACTGTTGCGTGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCg < 5:361377/149‑1 (MQ=255) ttGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCg > 1:147474/1‑148 (MQ=255) gAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACg < 5:202483/149‑1 (MQ=255) aaaaCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGt < 4:34890/149‑1 (MQ=255) aaaaCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGCTACGGCAGCAGGTGCGGCCACCTGCTCTTCCGGACg > 4:52525/1‑148 (MQ=255) ataCGACTGTTGCGGGTCTCGAGGCTGTTCAAGCAGCGGCGAGGCCAGGGGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTAGGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGAAGTa < 1:374374/147‑1 (MQ=255) aaaCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTa < 5:358260/149‑1 (MQ=255) aaCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTg > 3:170626/1‑93 (MQ=255) aaCGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTg < 4:170626/93‑1 (MQ=255) aaCGACTGTTGCGGGGCTCGAGGCTATTCAAGCACCGGCGTGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTAc < 2:318784/149‑1 (MQ=255) cGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACAt < 4:339817/149‑1 (MQ=255) gACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATc < 8:46539/149‑1 (MQ=255) gACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATc > 2:322053/1‑149 (MQ=255) gACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATc > 7:203426/1‑149 (MQ=255) aCTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCg < 4:45150/149‑1 (MQ=255) ttGCGGGGCTCGAGGCTGGTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGcc < 4:64065/148‑1 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAgg > 3:171176/1‑148 (MQ=255) ggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCAc > 7:38669/1‑149 (MQ=255) cTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACgg > 5:93083/1‑149 (MQ=255) ggCTGTTCAAGCACCGGCGAGGCAAGGCGCATTTCACCCTGGGGCCCGAAGTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGTAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCaa < 1:282699/149‑1 (MQ=255) ttCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGc < 3:135782/149‑1 (MQ=255) cAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGTCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGcc < 4:9971/148‑1 (MQ=255) aaGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCa > 2:280754/1‑148 (MQ=255) aaGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCa < 2:147474/148‑1 (MQ=255) cACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑a < 5:284613/149‑1 (MQ=255) cGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑Agg > 3:320670/1‑148 (MQ=255) ggCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑Agg > 1:337887/1‑147 (MQ=255) gCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGCGCTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑Agg > 1:73224/1‑147 (MQ=255) cGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAg > 6:327564/1‑148 (MQ=255) cGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGt > 6:176916/1‑149 (MQ=255) ccAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGc < 8:38669/149‑1 (MQ=255) gcgcATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCAcc > 2:27366/1‑148 (MQ=255) cATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATTCACCGAgc < 1:322053/149‑1 (MQ=255) ttCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGcc > 2:271862/1‑149 (MQ=255) aCCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGCGCGCCCtt > 5:363482/1‑149 (MQ=255) cTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTcgc < 5:330781/149‑1 (MQ=255) gCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAAc > 4:359709/1‑149 (MQ=255) aaCTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCt < 3:46390/64‑1 (MQ=255) aaCTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCt > 4:46390/1‑64 (MQ=255) ccccACCGGC‑CAGCAGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACt > 1:222913/4‑149 (MQ=255) ccccACCGGC‑CAGCAGGCCGGTGAGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCACGGCACGGTGCAAGGTGCCAGAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACt > 6:11172/4‑149 (MQ=255) aCTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTAc < 8:42572/148‑1 (MQ=255) ccACCGGC‑CAGCAGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACtt > 5:381263/2‑148 (MQ=255) cACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCa > 7:34417/1‑149 (MQ=255) acgggC‑CTTCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTAGATCGGCGAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTc < 3:52525/144‑1 (MQ=255) aCCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAcc < 1:51743/141‑1 (MQ=255) aCCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAAcc > 2:51743/1‑140 (MQ=255) cGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGCGCGCCCTGCGCGGAACCGTACTTCAGGc > 6:190481/1‑149 (MQ=255) c‑cTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCttg < 4:320670/149‑1 (MQ=255) tgctgGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCttggt > 7:195086/1‑149 (MQ=255) ctgGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCA‑CAAGCGCCCTTCGCGGAACCGTACTTCATGCttggttgg > 6:19580/1‑149 (MQ=255) | CAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGGCGCATTTCACCCTGGGGCCCGAACTCACCGGC‑CTGCTGGCCGGTGGGGCGAACCAGCTCAGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC‑AGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG > NC_002947/5566268‑5566564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |