Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,583,529 | T→A | 8.4% | K735* (AAG→TAG) ‡ | parC ← | DNA topoisomerase IV subunit A |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,583,529 | 0 | T | A | 8.4% | 156.1 / 2.9 | 56 | K735* (AAG→TAG) ‡ | parC | DNA topoisomerase IV subunit A |
Reads supporting (aligned to +/- strand): ref base T (25/26); new base A (2/3); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
CAAGGGGCATATCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGCTGGCCACCC > NC_002947/5583382‑5583675 | cAAGGGGCATATCATCCGCGAAATAACCGACCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACACATCGACGCGCTGGAACCCGCGTGGCAGCtt > 1:29541/1‑148 (MQ=255) cATATCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCAAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCcgc < 8:38968/149‑1 (MQ=255) atatCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCcacg > 2:43712/1‑149 (MQ=255) atatCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCcacg > 2:49220/1‑149 (MQ=255) tatCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCgcgc > 7:232147/1‑149 (MQ=255) tatCATCCGCGAAATAACAGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCCacgc < 8:127021/149‑1 (MQ=255) tcatcCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCCacgcg < 1:43712/148‑2 (MQ=255) tcatcCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCCacgcg < 1:49220/148‑2 (MQ=255) catcCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGa > 4:357335/1‑149 (MQ=255) tcCCCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCACGTGGCAGCTTGCTGCCGCGCCGAcc < 6:6112/149‑1 (MQ=255) cgAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCgcgc < 5:317080/149‑1 (MQ=255) aTAACCGCCCGACTCCAGCATTTCTCCCCGAAACGGCGTTTAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGc < 2:358262/149‑1 (MQ=255) cGTCCGACTCCAGCCTTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTg < 5:374130/149‑1 (MQ=255) cGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTGAATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCtt > 1:302713/1‑149 (MQ=255) tCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTa < 3:357335/149‑1 (MQ=255) tCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTa < 6:335855/149‑1 (MQ=255) aGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCCCTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAg > 5:105045/1‑149 (MQ=255) cATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTAGGCACTTCCACCTGCAACCCATCGACGCGATGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGgt > 4:322094/1‑149 (MQ=255) cccGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTcc < 6:5874/146‑1 (MQ=255) cccGAAACGGAGTTGAAATTGCAGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGcc > 4:162036/1‑149 (MQ=255) ccGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCt > 3:27037/1‑149 (MQ=255) cGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCtt > 3:313221/1‑149 (MQ=255) cGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACa < 6:172668/149‑1 (MQ=255) cGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACa < 2:197054/149‑1 (MQ=255) gTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTTGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAg > 1:275039/1‑149 (MQ=255) gTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAg < 3:136740/149‑1 (MQ=255) ttGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGc < 4:27037/149‑1 (MQ=255) ccAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGc > 8:47576/1‑149 (MQ=255) aCAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATa > 1:86670/1‑148 (MQ=255) aaCCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCaa > 1:285571/1‑144 (MQ=255) aaCCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCaa < 2:285571/144‑1 (MQ=255) aTGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTcgc < 4:313221/148‑1 (MQ=255) gTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGcc > 4:176621/1‑149 (MQ=255) gTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGcc > 6:248429/1‑149 (MQ=255) gTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTCCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCgcgc > 6:258159/1‑148 (MQ=255) tCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGATAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc < 3:114903/143‑1 (MQ=255) tCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGAAAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc > 4:114903/1‑143 (MQ=255) ggCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTc > 5:375717/1‑149 (MQ=255) gCACTTCCACCTGCAACCCATCGAGGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCg < 2:29541/149‑1 (MQ=255) cACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCgg < 8:232147/149‑1 (MQ=255) tCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGTCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAAt > 4:219768/1‑149 (MQ=255) cACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc < 4:60182/133‑1 (MQ=255) cACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc > 3:60182/1‑133 (MQ=255) cACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCa > 2:298735/1‑149 (MQ=255) cTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATa < 7:210694/122‑1 (MQ=255) cTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATa > 8:210694/1‑122 (MQ=255) gCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGc > 1:187275/1‑148 (MQ=255) cccATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGAt < 6:105045/149‑1 (MQ=255) ccATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATc < 2:86670/149‑1 (MQ=255) ccATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGACGACCGCGCTCGCCCATGTAGTGCTCCAGGACGTCCGACTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATGACGGc > 7:317720/1‑143 (MQ=255) cATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCg < 2:302713/149‑1 (MQ=255) gcgcTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACaa < 2:275039/149‑1 (MQ=255) tGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAAttc > 8:332116/1‑149 (MQ=255) aCCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGTTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCa < 3:322094/149‑1 (MQ=255) aCCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCa < 1:298735/149‑1 (MQ=255) gcgTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGc > 7:209016/1‑149 (MQ=255) cTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGCTGGCCAccc < 7:47576/149‑1 (MQ=255) | CAAGGGGCATATCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGT‑TATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGCTGGCCACCC > NC_002947/5583382‑5583675 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |