Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,583,529 T→A 8.4% K735* (AAG→TAG) ‡ parC ← DNA topoisomerase IV subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,583,5290TA 8.4% 156.1 / 2.9 56K735* (AAG→TAG) ‡parCDNA topoisomerase IV subunit A
Reads supporting (aligned to +/- strand):  ref base T (25/26);  new base A (2/3);  total (27/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

CAAGGGGCATATCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGCTGGCCACCC  >  NC_002947/5583382‑5583675
                                                                                                                                                    |                                                                                                                                                  
cAAGGGGCATATCATCCGCGAAATAACCGACCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACACATCGACGCGCTGGAACCCGCGTGGCAGCtt                                                                                                                                                    >  1:29541/1‑148 (MQ=255)
       cATATCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCAAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCcgc                                                                                                                                            <  8:38968/149‑1 (MQ=255)
        atatCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCcacg                                                                                                                                           >  2:43712/1‑149 (MQ=255)
        atatCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCcacg                                                                                                                                           >  2:49220/1‑149 (MQ=255)
         tatCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCgcgc                                                                                                                                          >  7:232147/1‑149 (MQ=255)
         tatCATCCGCGAAATAACAGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCCacgc                                                                                                                                          <  8:127021/149‑1 (MQ=255)
           tcatcCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCCacgcg                                                                                                                                         <  1:43712/148‑2 (MQ=255)
           tcatcCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGCGGCAGCAAGCTGCCacgcg                                                                                                                                         <  1:49220/148‑2 (MQ=255)
            catcCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGa                                                                                                                                       >  4:357335/1‑149 (MQ=255)
              tcCCCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCACGTGGCAGCTTGCTGCCGCGCCGAcc                                                                                                                                     <  6:6112/149‑1 (MQ=255)
                  cgAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCgcgc                                                                                                                                 <  5:317080/149‑1 (MQ=255)
                      aTAACCGCCCGACTCCAGCATTTCTCCCCGAAACGGCGTTTAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGc                                                                                                                             <  2:358262/149‑1 (MQ=255)
                           cGTCCGACTCCAGCCTTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTg                                                                                                                        <  5:374130/149‑1 (MQ=255)
                           cGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTGAATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCtt                                                                                                                         >  1:302713/1‑149 (MQ=255)
                             tCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTa                                                                                                                      <  3:357335/149‑1 (MQ=255)
                             tCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTa                                                                                                                      <  6:335855/149‑1 (MQ=255)
                                      aGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCCCTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAg                                                                                                             >  5:105045/1‑149 (MQ=255)
                                        cATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTAGGCACTTCCACCTGCAACCCATCGACGCGATGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGgt                                                                                                           >  4:322094/1‑149 (MQ=255)
                                                cccGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTcc                                                                                                      <  6:5874/146‑1 (MQ=255)
                                                cccGAAACGGAGTTGAAATTGCAGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGcc                                                                                                   >  4:162036/1‑149 (MQ=255)
                                                 ccGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCt                                                                                                  >  3:27037/1‑149 (MQ=255)
                                                  cGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCtt                                                                                                 >  3:313221/1‑149 (MQ=255)
                                                          cGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACa                                                                                         <  6:172668/149‑1 (MQ=255)
                                                          cGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACa                                                                                         <  2:197054/149‑1 (MQ=255)
                                                           gTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTTGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAg                                                                                        >  1:275039/1‑149 (MQ=255)
                                                           gTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAg                                                                                        <  3:136740/149‑1 (MQ=255)
                                                                  ttGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGc                                                                                 <  4:27037/149‑1 (MQ=255)
                                                                          ccAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGc                                                                         >  8:47576/1‑149 (MQ=255)
                                                                                   aCAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATa                                                                 >  1:86670/1‑148 (MQ=255)
                                                                                     aaCCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCaa                                                                   >  1:285571/1‑144 (MQ=255)
                                                                                     aaCCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCaa                                                                   <  2:285571/144‑1 (MQ=255)
                                                                                              aTGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTcgc                                                       <  4:313221/148‑1 (MQ=255)
                                                                                                gTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGcc                                                    >  4:176621/1‑149 (MQ=255)
                                                                                                gTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGcc                                                    >  6:248429/1‑149 (MQ=255)
                                                                                                gTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTCCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCgcgc                                                     >  6:258159/1‑148 (MQ=255)
                                                                                                 tCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGATAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc                                                         <  3:114903/143‑1 (MQ=255)
                                                                                                 tCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGAAAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc                                                         >  4:114903/1‑143 (MQ=255)
                                                                                                   ggCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTc                                                 >  5:375717/1‑149 (MQ=255)
                                                                                                    gCACTTCCACCTGCAACCCATCGAGGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCg                                                <  2:29541/149‑1 (MQ=255)
                                                                                                     cACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCgg                                               <  8:232147/149‑1 (MQ=255)
                                                                                                         tCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGTCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAAt                                           >  4:219768/1‑149 (MQ=255)
                                                                                                           cACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc                                                         <  4:60182/133‑1 (MQ=255)
                                                                                                           cACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTc                                                         >  3:60182/1‑133 (MQ=255)
                                                                                                           cACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCa                                         >  2:298735/1‑149 (MQ=255)
                                                                                                              cTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATa                                                                 <  7:210694/122‑1 (MQ=255)
                                                                                                              cTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATa                                                                 >  8:210694/1‑122 (MQ=255)
                                                                                                                gCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGc                                     >  1:187275/1‑148 (MQ=255)
                                                                                                                    cccATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGAt                                <  6:105045/149‑1 (MQ=255)
                                                                                                                     ccATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATc                               <  2:86670/149‑1 (MQ=255)
                                                                                                                     ccATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGACGACCGCGCTCGCCCATGTAGTGCTCCAGGACGTCCGACTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATGACGGc                                     >  7:317720/1‑143 (MQ=255)
                                                                                                                      cATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCg                              <  2:302713/149‑1 (MQ=255)
                                                                                                                             gcgcTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACaa                       <  2:275039/149‑1 (MQ=255)
                                                                                                                                 tGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAAttc                   >  8:332116/1‑149 (MQ=255)
                                                                                                                                     aCCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGTTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCa               <  3:322094/149‑1 (MQ=255)
                                                                                                                                     aCCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCa               <  1:298735/149‑1 (MQ=255)
                                                                                                                                         gcgTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGc           >  7:209016/1‑149 (MQ=255)
                                                                                                                                                  cTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGCTGGCCAccc  <  7:47576/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CAAGGGGCATATCATCCGCGAAATAACCGTCCGACTCCAGCATTTCTGCCCGAAACGGCGTTGAAATTGCCGTTCCAGACATTACAACCGGTTATGTCGGCACTTCCACCTGCAACCCATCGACGCGCTGGAACCCGCGTGGCAGCTTGCTGCCGCGCCGACCGCGCTCGCCCTTGTAGTGCTCCAGGTCGTCCGCCTTCAAAGACAGGGTACGCTTGCCGGCCTGCAATACAAGGGTCGCGCCTTCGGGAATCACGGCCAGATCGGTAACAAATTCTTCACGGCTGGCCACCC  >  NC_002947/5583382‑5583675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: