Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,750,060 | C→T | 7.1% | intergenic (‑81/+48) | typA ← / ← thiI | ribosome associated GTPase/tRNA sulfurtransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,750,060 | 0 | C | T | 7.1% | 163.2 / 2.2 | 56 | intergenic (‑81/+48) | typA/thiI | ribosome associated GTPase/tRNA sulfurtransferase |
Reads supporting (aligned to +/- strand): ref base C (27/25); new base T (2/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.84e-01 |
TCGACCAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAATACAGCAAGT > NC_002947/5749912‑5750205 | tCGACCAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCcggc > 5:332231/1‑149 (MQ=255) gACCAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCcggcgg > 2:161807/1‑149 (MQ=255) gACCAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCcggcgg > 3:118833/1‑149 (MQ=255) aCCAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATAAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGt > 6:235961/1‑149 (MQ=255) cAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCg < 8:340539/149‑1 (MQ=255) gTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGc > 2:136705/1‑149 (MQ=255) aCCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATgg > 8:245077/1‑149 (MQ=255) ccATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATgg < 5:260053/148‑1 (MQ=255) tGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGaa < 5:67171/149‑1 (MQ=255) gTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATa < 3:78521/149‑1 (MQ=255) gTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATa < 4:118833/149‑1 (MQ=255) gTCAACGTGGGCGATGATGGCGAAGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATa < 8:311253/149‑1 (MQ=255) tCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATAc > 7:345908/1‑149 (MQ=255) gCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCAt < 7:245077/149‑1 (MQ=255) cGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGTCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCAGCCAt > 5:215727/1‑148 (MQ=255) cGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCgg < 8:345908/149‑1 (MQ=255) cGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCCTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCgg > 7:208358/1‑149 (MQ=255) gCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAggg > 8:184763/1‑108 (MQ=255) gCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAggg < 7:184763/108‑1 (MQ=255) gCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATg > 1:91167/1‑149 (MQ=255) gCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGCAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGaa > 8:214086/1‑118 (MQ=255) aTTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGc < 6:63790/137‑1 (MQ=255) aTTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGc > 5:63790/1‑137 (MQ=255) gATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATa < 6:110545/149‑1 (MQ=255) ctcGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCCGCGGGCCCGGCGGTCGGGAGGGCGATGGCGATTACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTgg > 6:292362/1‑149 (MQ=255) cGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGc < 1:136705/148‑1 (MQ=255) gATCAGAGGTTTCGGGTGCCGGCCAGTGTATGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATTGCGAATACTGCCGCCATACATCCCCGGCGTCTTATTTCGGAAGATAAA‑CACGCACATTg < 6:215727/145‑1 (MQ=255) gATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCAt > 5:134797/1‑149 (MQ=255) agagGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTcc > 7:353701/1‑149 (MQ=255) gagGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTccc > 2:288392/1‑149 (MQ=255) gATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCa > 1:195744/1‑149 (MQ=255) aTTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCAc > 8:325691/1‑149 (MQ=255) ttCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACt > 1:9640/1‑149 (MQ=255) ggTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGa < 8:208358/148‑1 (MQ=255) gTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCTGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGc < 5:235961/149‑1 (MQ=255) gctcccAGTGTATGCGGCCAATAGGTACCGTTTAATGCTCAGCGGGCCCGGCGTTCGGGAGGGCGATTGCTAATACTGCAGCCATACATCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTACCTCACTGAGCAGAt < 8:110425/146‑1 (MQ=255) cgccCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATg < 7:100358/149‑1 (MQ=255) cAGTGTAGGCGGCCAATATGTACCGTTTAACGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGgtgt < 4:338466/149‑1 (MQ=255) ggcggcCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTgtgcgtgc < 1:161807/148‑1 (MQ=255) gcCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACg > 7:94102/1‑149 (MQ=255) aaTATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCt > 4:299268/1‑149 (MQ=255) tGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAACCACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCtca < 1:288392/148‑1 (MQ=255) tGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCtcatc < 8:94102/149‑1 (MQ=255) tACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCtcatca > 6:115030/1‑148 (MQ=255) tACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCtcatca > 8:29868/1‑148 (MQ=255) acGTTTAAGGCTCAGCGGGCCCCGCGGTCGGGAGGGCGAGGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATcaca < 6:231144/147‑1 (MQ=255) cGTTTAAGGCTCAGCGGGCCCGGTGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGgtgt < 5:177814/126‑1 (MQ=255) cGTTTAAGGCTCAGCGGGCCCGGTGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGgtgt > 6:65551/1‑126 (MQ=255) cGTTTAAGGCTCAGCGGGCCCGGTGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGgtgt > 6:177814/1‑126 (MQ=255) cGTTTAAGGCTCAGCGGGCCCGGTGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGgtgt < 5:65551/126‑1 (MQ=255) cTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACAATGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGc > 5:228357/1‑148 (MQ=255) tCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCgg > 7:160895/1‑70 (MQ=255) tCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCgg < 8:160895/70‑1 (MQ=255) tCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCt > 6:34224/1‑99 (MQ=255) tCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCt < 5:34224/99‑1 (MQ=255) aGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAAt < 7:29868/148‑1 (MQ=255) gggCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAATACAg > 4:234967/1‑149 (MQ=255) ccGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAATACAGCAAg > 7:102054/1‑149 (MQ=255) ccGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAATACAGCAAg > 2:96590/1‑149 (MQ=255) ggcggTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAATACAGCAAGt > 2:368725/1‑148 (MQ=255) | TCGACCAGAGTGGTTTTACCATGGTCAACGTGGGCGATGATGGCGATGTTACGCAGATTTTCGATCACAAGTGTATCTCGATCAGAGGATTCGGTTGCCGCCCAGTGTAGGCGGCCAATATGTACCGTTTAAGGCTCAGCGGGCCCGGCGGTCGGGAGGGCGATGGCGAATACTGCCGCCATACAGCCCCGGCGTCTTATGTCGGACGATAAA‑CACGCACATTGGCATGTCCCTCACTGAGCAGATGGTGTGCGTGCAAACGGCTCATCACACCCTTGTCGCAATACAGCAAGT > NC_002947/5749912‑5750205 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |