Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 524,173 G→A 9.6% intergenic (+40/‑776) tyrS → / → PP_16SC tyrosine‑‑tRNA ligase/16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947524,1730GA 9.6% 135.6 / 3.8 52intergenic (+40/‑776)tyrS/PP_16SCtyrosine‑‑tRNA ligase/16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (22/25);  new base A (2/3);  total (24/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.24e-01

GATGGTGCAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCGGCTTGAGA  >  NC_002947/524029‑524319
                                                                                                                                                 |                                                                                                                                                   
gATGGTGCAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAg                                                                                                                                                  <  8:15504/148‑1 (MQ=255)
 aTGGTGCAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGc                                                                                                                                                >  2:4154/1‑149 (MQ=255)
       cAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGATGTCGTTTGGTCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCTACCGGCCTcccc                                                                                                                                         <  4:123297/149‑1 (MQ=255)
       cAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCTACTGGCCTcccc                                                                                                                                         <  6:83293/149‑1 (MQ=255)
       cAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTccc                                                                                                                                          <  6:239950/148‑1 (MQ=255)
          tGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAg                                                                                                                                                  >  6:129646/1‑138 (MQ=255)
          tGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAg                                                                                                                                                  <  5:129646/138‑1 (MQ=255)
              cGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGt                                                                                                                                  >  7:332068/1‑149 (MQ=255)
                 cAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCCAGCGGGCAAGAAGACGTTTGGCCGGGTTTCCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCCGTATGCCGACCCGCGTTGtttt                                                                                                                               >  6:315650/1‑149 (MQ=255)
                     gACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTggg                                                                                                                           <  8:332068/149‑1 (MQ=255)
                        ttCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTTGGGtt                                                                                                                        >  4:243346/1‑149 (MQ=255)
                         tCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGGCGGGGGGCGCGCCCCGCATGTTTTTGGGGgtt                                                                                                                       >  2:196701/1‑149 (MQ=255)
                          cATGTTTGTCCTTGGTGCTACCCATGTGTCCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATACAAGCGGGGAGGCCGGTAGGCCGCCCCGCTTTGTTTTTGGGGttt                                                                                                                       <  1:363761/148‑1 (MQ=255)
                             gTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGGCGGGGGGGCGGACCCCCGGTGTTTTTTGGGTTtggt                                                                                                                    >  6:237504/1‑149 (MQ=255)
                              tttGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGGCGGTTGGGAGCACCGCGTTGTTTTTTTGGGTtggtgg                                                                                                                  >  7:135336/1‑149 (MQ=255)
                              tttGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTtggtg                                                                                                                   <  3:243346/148‑1 (MQ=255)
                               ttGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGGCCGTAGGCCTCCCCCCGTTTTTTTTGGGGTTTtgtggt                                                                                                                 >  8:42564/1‑149 (MQ=255)
                                     ttGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGc                                                                                                                                       >  6:259693/1‑121 (MQ=255)
                                     ttGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGc                                                                                                                                       <  5:259693/121‑1 (MQ=255)
                                     ttGCTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGGGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGc                                                                                                                                       <  5:259694/121‑1 (MQ=255)
                                       ggTGCTACCCTTGTGTGCCAAGCGGGAAATAAGGGGTTTGGCCGGGTTACCCTCAAGGCTGTGTGATGGCCTGGATGGTGTAGCTATATCGAAGCGGGGAGGCCGGTAGGCCGCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCtgt                                                                                                           <  5:237504/147‑1 (MQ=255)
                                       ggTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCtgtt                                                                                                          <  3:148849/148‑1 (MQ=255)
                                        gTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTATGCCGCCCCCCGTTGTTTTTGTGGGTTGGGGGTTggggtttt                                                                                                        >  4:45885/1‑142 (MQ=255)
                                          gCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGAAGCTATATAGAAGCGGGGAGGGCGGGAGGCCGCCCCGCGGTGTTTTTGGGGGTTGGTGGGTGGtgttggat                                                                                                      >  1:119816/1‑146 (MQ=255)
                                           cTACCTCTGTGTGCCAAGCGGGCAAGCAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTag                                                                                                      <  4:248948/148‑1 (MQ=255)
                                             aCCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGCCCGGTGGCCAGCCCGCCTTGTTTTTTGGGGTTTGTGGTTGGttttgtttggg                                                                                                   >  3:162579/1‑144 (MQ=255)
                                               ccATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTTCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTagggg                                                                                                   >  7:306492/1‑147 (MQ=255)
                                                        ccAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGCGGCCCGGAGGCCAACCCGCGTTTTTTTTTTGGTTTTGTGGTTGCTGTTGTTAGGGGAGGGGGCTGt                                                                                        >  2:77359/1‑149 (MQ=255)
                                                          aaGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGGCGGGTGGGGGAGCCGGAGTGTTTTTTGGGGTTGGTGGGTGGGGTTGTtgggggggggggggggtt                                                                                      >  8:142979/1‑143 (MQ=255)
                                                          aaGCGGGCAAGAAGTCGTTTGCCCGGGTTACCCTCACGGGGGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGttt                                                                                      <  7:195856/149‑1 (MQ=255)
                                                           aGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGGGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGtttt                                                                                     <  1:77359/149‑1 (MQ=255)
                                                             cGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCTACCGGCCTccc                                                                                                                                          <  7:265493/94‑1 (MQ=39)
                                                             cGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTga                                                                                   <  4:39290/149‑1 (MQ=255)
                                                             cGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTga                                                                                   <  1:4154/149‑1 (MQ=255)
                                                               ggCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGGCGGTAGGCCTCCCCGCTTTTTTTTTTGGGTTTGGTGGGTGCTGTTTTAGGGGGGGGGGGCTGGTTTgtga                                                                                 >  2:132529/1‑149 (MQ=255)
                                                               ggCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTGCCCCCTTTGTTTTTGGGGTTTGGTGGGTGCTGTTTTAGGGGGAGGGGGGGGTTTTgt                                                                                   >  5:181327/1‑146 (MQ=255)
                                                                 cAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGTTGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAgg                                                                               <  7:42564/149‑1 (MQ=255)
                                                                   agaagTCGTTTGGCGGGTTTACCCTCATGGCTGAGTGTTTGCGTGGTTGGTGTAGCTATATCGAAGCGGGGAGGCGGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGgt                                                                             <  3:189823/149‑1 (MQ=38)
                                                                       gTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGGGGGCGGTTGGCCGCCCCGCGGTGTTTTTTGGGTTTGGTGGTTTGTGTTGTTTGGGGGGGGGGGGGGTTTGTGAGGGGGTTg                                                                         >  8:6942/1‑149 (MQ=255)
                                                                          gTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGGCGGGTGGCGGCCCCCCGTTGTTTTTTGGGGTTGTTGGGGGGTGTTGTTGGGGGGGGGGGGGGGTTTGGGAGGGTGTTgggg                                                                      >  6:103907/1‑147 (MQ=255)
                                                                                 cGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGAt                                                               <  3:45885/149‑1 (MQ=255)
                                                                                        cccTCAAGGCTCTCTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTcc                                                         <  1:132529/148‑1 (MQ=255)
                                                                                           tCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGCGGCCGGGAGGCCTCCCCGCTTTGTTTTTTGGGTTTGGGGGTTGGTGTTGTATGGGGAGGGGGGGGTTTTGATCGGGTGTTGGCGGTGCGGTGTGTGCGCca                                                     >  1:49169/1‑149 (MQ=37)
                                                                                                                               taGAAGGGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGccgccc                 <  4:162579/149‑1 (MQ=255)
                                                                                                                                  aaGCGGGGAGGCCTACCGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCcgcg              >  5:354371/1‑149 (MQ=255)
                                                                                                                                    gCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTc            >  4:23606/1‑149 (MQ=255)
                                                                                                                                       ggggAGGCCTACCGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGACAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCg          >  6:167741/1‑149 (MQ=18)
                                                                                                                                       ggggAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCg          <  7:142979/149‑1 (MQ=255)
                                                                                                                                           aGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTGTGGTGGTTGCTGTTGTAGGGGGCGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCGGCtt      <  5:131372/149‑1 (MQ=255)
                                                                                                                                             gcgggTAGGCCTGCCCGCGTTGTTTTTGGGGGTTGGGGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCGTGTGAGATCGAGCGCCGCCCGCGTCCGGCTTga    <  8:306492/146‑1 (MQ=21)
                                                                                                                                             gCCGGTAGGCCGCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCGGCTTga    <  2:49169/149‑1 (MQ=255)
                                                                                                                                              ccGGTAGGCCTCCCCGCTTTGTTTTTGGGGGTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCGGCTTgag   <  3:23606/149‑1 (MQ=255)
                                                                                                                                              ccGGTAGGCCGCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGGGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCGGCTTgag   <  5:315650/149‑1 (MQ=255)
                                                                                                                                                ggTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCCTCCGGCTTgaga  >  8:213197/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
GATGGTGCAGTGGTCGACAAGGACTTCATGTTTGTCCTTGGTGCTACCCATGTGTGCCAAGCGGGCAAGAAGTCGTTTGGCCGGGTTACCCTCAAGGCTGAGTGATTGCCTGGATGGTGTAGCTATATAGAAGCGGGGAGGCCGGTAGGCCTCCCCGCTTTGTTTTTGGGGTTTGGTGGTTGCTGTTGTAGGGGGAGGGGGCTGTTTTGAGAGGGTGTTGGCGGTGAGATGTGTCCGCCACAACCCTTGCAGCGCCTGTGAGATCGAGCGCCGCCCGCGTCCGGCTTGAGA  >  NC_002947/524029‑524319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: