| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,060,463 | G→A | 6.2% | intergenic (+99/+82) | PP_5311 → / ← PP_5312 | signal transduction protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,060,463 | 0 | G | A | 6.2% | 298.2 / 5.4 | 103 | intergenic (+99/+82) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (46/47); new base A (2/4); total (50/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-02 | |||||||||||
Only 100 of 105 total aligned reads displayed.
CGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTG > NC_002947/6060316‑6060611 | cGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCg > 7:24056/1‑148 (MQ=255) aCCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCg < 2:115458/149‑1 (MQ=255) ccTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCgg < 7:282138/149‑1 (MQ=255) cGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCTTCGCCGGTgttcgc < 1:234919/149‑6 (MQ=255) tGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCa > 4:42081/1‑149 (MQ=255) gCTTCGCAGTTCCATGCTCCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGt < 7:288755/148‑1 (MQ=255) ttCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGc > 3:121405/1‑149 (MQ=255) ttCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGc > 6:19989/1‑149 (MQ=255) ttCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGc > 4:322504/1‑149 (MQ=255) cAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGc > 3:79195/1‑145 (MQ=255) cAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGc < 4:79195/145‑1 (MQ=255) aGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGtt < 2:247951/149‑1 (MQ=255) ccATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcg‑c > 3:336734/1‑149 (MQ=255) ccATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcg‑c > 2:54125/1‑149 (MQ=255) cATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcg‑cg > 3:299810/1‑149 (MQ=255) cATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcg‑cg < 2:39491/149‑1 (MQ=255) cATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTcg‑c < 7:69423/148‑1 (MQ=255) aTGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGATTCG‑Cgg > 2:128873/1‑149 (MQ=255) aTGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCCAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑Cgg > 2:278139/1‑149 (MQ=255) aCCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCAc > 3:60640/1‑149 (MQ=255) cGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGc < 3:227409/149‑1 (MQ=255) gcattaagcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCc > 4:290816‑M2/1‑148 (MQ=255) ttaagcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGCAGCCCGTGCCATGCACCCCGTAGCGTGTTTAG‑CGGGCACGCcccg < 4:3912‑M2/149‑5 (MQ=255) taagcattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCccgct < 4:249941‑M2/149‑6 (MQ=255) cattaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCccgctccca > 1:54125‑M2/1‑140 (MQ=255) attaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGAGGCTGTGGGAGCGGGCTTGCCAGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCccgctcc < 1:302954‑M2/148‑8 (MQ=255) attaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCccgctcccac > 2:325499‑M2/1‑139 (MQ=255) ttaaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCccgctccca < 4:114308‑M2/147‑10 (MQ=255) taaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGGTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCTTCGCCGGTgtt < 8:352742/106‑3 (MQ=25) taaCACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCTTCGCCGGTgtt > 7:352742/1‑104 (MQ=25) acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTa > 1:70987/1‑148 (MQ=255) acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTa > 3:172992/1‑148 (MQ=255) acaTAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTa > 2:93293/1‑148 (MQ=255) tAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGc < 3:42081/149‑1 (MQ=255) ccTGCTGGAGCAACTGTCTTGCTCAATTGCTACCAGCTGGCGCGATTTTGGA‑‑CTGGGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGtc < 4:121405/149‑1 (MQ=255) cTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTTCCCGCGAACACCGGCGAAGCCGGTGCCATTCACCGCGTAGCTTTTTTAG‑CGGGCACCCCCGCTCCCACAGGTAAAGCGtc > 8:229689/1‑148 (MQ=25) tGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGtca > 1:170975/1‑148 (MQ=255) cGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGtcatc < 3:3912/148‑1 (MQ=255) gCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATcccc > 8:85140/1‑149 (MQ=255) aaCTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGt > 8:42807/1‑149 (MQ=255) aaCTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGt > 7:95229/1‑149 (MQ=255) tGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCgg > 7:147195/1‑149 (MQ=255) cTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCGTCGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCa < 1:93293/149‑1 (MQ=255) tCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGc > 6:94908/1‑149 (MQ=255) tCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGc > 7:143866/1‑149 (MQ=255) tCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGc > 1:333246/1‑149 (MQ=255) tCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGc > 3:46674/1‑149 (MQ=255) tCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGc > 5:79662/1‑149 (MQ=255) aaTTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGc < 1:36557/147‑1 (MQ=255) aTTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCtt > 5:79487/1‑149 (MQ=255) tttCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAACCtt > 4:110884/1‑148 (MQ=255) tAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGCCTTCAGCCTttcttc > 4:97182/1‑149 (MQ=255) aCAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTttctt < 4:176117/146‑1 (MQ=255) aCAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTtcttct < 4:60640/148‑1 (MQ=255) aCAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTcttctt < 3:322504/149‑1 (MQ=255) ctgCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGTGCTTACCCGCGAACTCGGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTcttctt < 3:263642/146‑1 (MQ=255) ctgCTGGAGCGTTTTTGGA‑‑CTGTGGGAGCGGGCTTGCGCGCGAACTCCGGCGAAGCCGTTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCGGCTCCCACAGGTAATGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt < 8:314591/147‑1 (MQ=255) cAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt < 4:46674/149‑1 (MQ=255) cAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCttt < 5:19989/149‑1 (MQ=255) cgcgATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCa < 2:302954/149‑1 (MQ=255) cgcgATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCa < 7:85140/149‑1 (MQ=255) cgcgATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCa < 2:70987/149‑1 (MQ=255) gcgATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg < 2:108964/149‑1 (MQ=255) gcgATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAg < 2:333246/149‑1 (MQ=255) ttttGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTAt < 8:147195/149‑1 (MQ=255) tGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGt < 1:159887/144‑1 (MQ=255) tGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTAG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGt > 2:159887/1‑144 (MQ=255) ggA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtc < 8:24056/148‑1 (MQ=255) gA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtcat < 3:293698/149‑1 (MQ=255) gA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtca < 8:143866/148‑1 (MQ=255) tgtgGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCaa > 4:263021/1‑149 (MQ=255) tgGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAc < 2:374148/148‑1 (MQ=255) tgGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCAGCAAcc > 4:106855/1‑149 (MQ=255) ggAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAAcccc > 2:223122/1‑149 (MQ=255) gAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCt < 4:336734/149‑1 (MQ=255) gAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCt < 6:22945/149‑1 (MQ=255) gAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCt < 7:229689/149‑1 (MQ=255) gAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACACCt > 7:165680/1‑149 (MQ=255) gCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTg > 1:53548/1‑148 (MQ=255) gggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGATTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGaa < 1:128873/149‑1 (MQ=255) ggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtc > 5:219344/1‑134 (MQ=255) ggCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTtc < 6:219344/134‑1 (MQ=255) gCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCG‑CGGGCACGCccgctcccacagactgattgccattaagcgggcctatcgctacagtgccggcccggtttttgttgcctcgctaacgaatcatgact < 7:191629‑M2/149‑87 (MQ=255) ttGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACcac < 1:278139/149‑1 (MQ=255) ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCCCAGGTAAAGCGTCATCATCCCCCTCGGGCTTCAGCCTTTCTTCTTTGGTATCAGGTATTTCATCAACCACTGGAACCacaaca > 1:142661/1‑149 (MQ=37) ccGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCa > 3:363185/1‑149 (MQ=255) ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTcg‑cg < 2:270251/50‑1 (MQ=11) ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTcg‑cg > 1:270251/1‑50 (MQ=11) cgcgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGTGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAACCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc < 3:110884/149‑1 (MQ=255) cgcgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc > 6:176117/1‑149 (MQ=255) gcgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCGCAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCAc > 5:165053/1‑148 (MQ=255) cgAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCa < 3:114308/149‑1 (MQ=255) cgAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCG‑CGGGCACGCccgctcccacagactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgttgcctcgctaacgaatcatgactcccttagaa < 1:317476‑M2/149‑96 (MQ=255) cgAACACAGGCGAAGCCGGTGCCATGCACCGCGTCGCTTCTTTCG‑AGGGCACGCCCGCTCCCACAGGTAAAGCCTCATCATCCCAGTCGGGCATCAGCCTTTCTTCATTGGTATCAGCTATTTCATCAACCCCTGGAACCACATAAc > 5:145334/1‑147 (MQ=37) tggcacCGGCTTCGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAg > 7:321113/4‑149 (MQ=255) gAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCG‑CGGGCACGCccgctcccacagactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgttgcctcgctaacgaatcatgactcccttagaac < 3:305016‑M2/149‑97 (MQ=255) ccGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCG‑CGGGCACGCccgctcccacagactgattgccattaagcgggcctatcgctacagtgacggcccgttttttgttgcctcgctaacgaatcatgactcccttagaacgctat > 2:317476‑M2/1‑48 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCCTCATCCCCGTCGGGCTTCAGCCTTTCATCTTTGGTTTCAGGAATTTCATCAACCCCTGGAACCACATCACCAGCGCCgg > 3:282152/1‑149 (MQ=255) cGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCgg > 7:323356/1‑149 (MQ=255) gAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTg > 1:152133/1‑149 (MQ=255) | CGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGA‑‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACCGCGTCGCTTGTTTCG‑CGGGCACGCCCGCTCCCACAGGTAAAGCGTCATCATCCCCGTCGGGCTTCAGCCTTTCTTCTTTGGTTTCAGGTATTTCATCAACCCCTGGAACCACATCACCAGCGCCGGGTTG > NC_002947/6060316‑6060611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |