| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,173,233 | A→G | 6.2% | intergenic (‑152/+38) | PP_5410 ← / ← glmU | DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,173,233 | 0 | A | G | 6.2% | 334.2 / 8.0 | 112 | intergenic (‑152/+38) | PP_5410/glmU | DeoR family transcriptional regulator/bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (53/52); new base G (2/5); total (55/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGAGCCGGC > NC_002947/6173086‑6173381 | gTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTca > 2:165257/1‑148 (MQ=255) tttAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTcaca < 5:26748/149‑1 (MQ=255) gTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATaa < 4:268054/147‑1 (MQ=255) gTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATaa > 3:268054/1‑147 (MQ=255) tttCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTc > 6:16505/1‑149 (MQ=255) tcgattccaAAGGTAATGGTTTCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTTACCTG‑TAGATTTTTTCCTTCTGCTTTTAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATGTGAATAAGTCg < 6:306588/148‑1 (MQ=255) gattcgaAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATGTGAATAAGTCGGc < 8:276392/148‑1 (MQ=255) cgaAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTc > 1:50748/1‑148 (MQ=255) gaAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGa > 7:295703/1‑149 (MQ=255) gaAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACGTATTCACATAAGTCGGC‑TTTCGa > 4:264177/1‑149 (MQ=255) aaaGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGAt > 5:175208/1‑149 (MQ=255) ttAATGGTTGCAATCAAAACCTAAGACCCGCGATTCCTCAAGCTGTCGCTGACCTG‑TGGATAGTTTCCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGa > 6:290757/1‑148 (MQ=255) gTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCt > 3:133379/1‑149 (MQ=255) gCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGTCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgt < 5:73808/148‑1 (MQ=255) gCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgt < 6:232440/148‑1 (MQ=255) cAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGa < 3:129482/149‑1 (MQ=255) aaTCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCGGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGaa > 8:76700/1‑149 (MQ=255) aaTCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTcac > 1:37660/1‑117 (MQ=255) aaTCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgtg > 6:11954/1‑147 (MQ=255) aaTCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgtg < 5:11954/147‑1 (MQ=255) aaTCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGaa > 6:129120/1‑149 (MQ=255) aTCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTGATGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGaa > 1:77364/1‑149 (MQ=255) tCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAAt > 5:95382/1‑148 (MQ=255) cAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATa > 7:88815/1‑148 (MQ=255) aaaaCCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCTCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATaa < 7:265177/148‑1 (MQ=255) aCCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCTGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCa < 7:76700/149‑1 (MQ=255) ccTAAGACGCGCGATTCGTCAAGCTGTCGCTGGCCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAg > 1:237546/1‑149 (MQ=255) cTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGc > 3:271462/1‑149 (MQ=255) cgcgcgATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCtcttct < 5:357169/149‑1 (MQ=255) gcgcgATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTcttctt > 2:3846/1‑149 (MQ=255) gcgcgATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTcttctt < 8:75483/149‑1 (MQ=255) gcgATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGa < 6:95382/149‑1 (MQ=255) gcgATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGa > 7:68606/1‑149 (MQ=255) gcgATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGa > 5:296976/1‑149 (MQ=255) gTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGATTTGAGGCGGTCCTATAGGCGCAGCCGAGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCAtctc > 4:6278/1‑149 (MQ=255) tCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgt > 5:142710/1‑120 (MQ=255) cAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTGTTCTTGATCTTCTCCg > 8:342102/1‑149 (MQ=255) aaGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCgg > 4:133686/1‑149 (MQ=255) aaGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCgg < 8:187350/149‑1 (MQ=255) aGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCggg > 1:286214/1‑149 (MQ=255) tCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGCTTTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCt < 1:104544/149‑1 (MQ=255) gCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTcc < 1:206603/149‑1 (MQ=255) gCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCACCTCTTCTTGATCTTCTCCGGGCGCTTcc < 1:212460/149‑1 (MQ=255) cTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGccc > 5:222013/1‑148 (MQ=255) tgGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGaaa < 1:3846/149‑1 (MQ=255) gATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATg > 6:130791/1‑149 (MQ=255) gATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATg > 8:110770/1‑149 (MQ=255) gATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATg < 7:282883/149‑1 (MQ=255) aTTGTTTGCTTATGCTTTGAGTCGGTCCATTTGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAATTCGTC‑TTTCTATGGAAATGGCTGTGAATAACTCAGATCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCTAAATg < 6:343246/148‑1 (MQ=255) ttGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCGGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGtt < 8:295703/149‑1 (MQ=255) tGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAAt < 5:268258/141‑1 (MQ=255) tGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAAt > 6:268258/1‑141 (MQ=255) gCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCt < 2:286214/148‑1 (MQ=255) ttCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGgc > 7:8391/1‑149 (MQ=255) ttCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCCTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTgcgagagc > 5:326646/1‑144 (MQ=255) ttCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCCTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTgc < 6:326646/143‑1 (MQ=255) cTGCTTTGAGGCGGTCCTTTAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCGCATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGgc < 3:281468/147‑1 (MQ=255) cTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgt < 8:124122/87‑1 (MQ=255) cTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCtgt > 7:124122/1‑87 (MQ=255) cTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGgcg < 5:16505/148‑1 (MQ=255) cTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCtcttct > 8:74055/1‑102 (MQ=255) cTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCtcttct < 7:74055/102‑1 (MQ=255) tttGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCAc > 3:51251/1‑149 (MQ=255) tGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACg < 6:296976/148‑1 (MQ=255) gAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACggg > 3:336409/1‑149 (MQ=255) atgCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACggg < 8:68606/146‑1 (MQ=255) aGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACggg < 3:298792/148‑1 (MQ=255) aGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGc < 6:175208/149‑1 (MQ=255) gCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTa > 4:95505/1‑149 (MQ=255) cTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGc > 5:191703/1‑147 (MQ=255) cTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGc > 7:148163/1‑147 (MQ=255) ataGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAgg > 7:165549/1‑149 (MQ=255) ggCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGgcgcgc > 7:343295/1‑130 (MQ=255) gcgcAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCAc < 4:271462/149‑1 (MQ=255) gcAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCAccc < 2:77364/149‑1 (MQ=255) ccGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCtt < 6:222013/149‑1 (MQ=255) cgcgCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTc < 8:8391/149‑1 (MQ=255) gcgcCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTc > 2:256000/1‑148 (MQ=255) gcgcCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCt < 1:165257/149‑1 (MQ=255) cAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTGTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAg > 5:249695/1‑149 (MQ=255) aaaaaGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTgg > 7:203653/1‑149 (MQ=255) aaaaaGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTgg < 1:332900/149‑1 (MQ=255) aaaaaGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTgg < 8:203653/149‑1 (MQ=255) aaaGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATCTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGt < 1:288537/149‑1 (MQ=255) aGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATATCTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACGCGCTTCTACAGCCTGGGTGa < 5:290757/149‑1 (MQ=255) ccGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATg < 6:355191/149‑1 (MQ=255) ccGACTTATGTGAATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTggg > 2:296220/1‑144 (MQ=255) ccGACTTATGTGAATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTggg > 2:291519/1‑144 (MQ=255) ccGACTTATGTGAATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTggg < 1:296220/144‑1 (MQ=255) ccGACTTATGTGAATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTggg < 1:291519/144‑1 (MQ=255) cGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTGTTCTTGATCTTCTCCGGGGGCTTCCAGCCCGAAATGTTGCACTGGCGCGCACGGGCTACAGGCAGGTCACCCGCTTCTACAGCCTGGGTGATg < 4:133379/148‑1 (MQ=255) cGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATgg < 5:271673/149‑1 (MQ=255) gACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGt < 5:252335/149‑1 (MQ=255) aCTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTc < 5:130791/149‑1 (MQ=255) ttATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTc > 1:105147/1‑147 (MQ=255) aTTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGa < 3:127432/147‑1 (MQ=255) aTTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGa < 2:105147/147‑1 (MQ=255) aTTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGAGc > 1:87479/1‑149 (MQ=255) acaTAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGAGCCgg < 8:165549/148‑1 (MQ=255) acaTAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGAGCCGGc > 1:296877/1‑149 (MQ=255) | GTTTAAGTTTCGATTCGAAAGTTAATGGTTGCAATCAAAACCTAAGACGCGCGATTCGTCAAGCTGTCGCTGACCTG‑TGGATTGTTTGCTTCTGCTTTGAGGCGGTCCTATAGGCGCAGCCGCGCCAATAAAAAAGCCGACTTATTCACATAAGTCGGC‑TTTCGATGGAAAGGGCTGTGAATAACTCAGCTCTTCTTGATCTTCTCCGGGCGCTTCCAGCCCGAAATGTTGCGCTGGCGCGCACGGGCTACAGCCAGGTCACCCGCTTCTACAGCCTGGGTGATGGTCGAGCCGGC > NC_002947/6173086‑6173381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |