| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 571,617 | G→A | 6.2% | intergenic (+43/+48) | ssb → / ← PP_0486 | single‑stranded DNA‑binding protein/GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 571,617 | 0 | G | A | 6.2% | 292.5 / 5.5 | 97 | intergenic (+43/+48) | ssb/PP_0486 | single‑stranded DNA‑binding protein/GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (46/45); new base A (4/2); total (50/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.08e-01 | |||||||||||
CAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGCGATGCGCA > NC_002947/571470‑571765 | cagGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGt > 8:60706/1‑149 (MQ=255) agGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGtt < 4:115536/149‑1 (MQ=255) cccAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGcc < 3:158097/149‑1 (MQ=255) ccAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGAACAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGccc > 8:26333/1‑149 (MQ=255) cAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCt < 5:255105/149‑1 (MQ=255) aGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTg < 1:176789/149‑1 (MQ=255) aGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTg < 3:169698/149‑1 (MQ=255) aGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTg > 7:89520/1‑149 (MQ=255) gcgcCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGGTCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTgg < 6:70408/149‑1 (MQ=255) gcgcCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTgg < 4:277950/149‑1 (MQ=255) gcCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGACTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGt < 5:122848/149‑1 (MQ=255) cGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGtttt > 3:176458/1‑149 (MQ=255) cGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGtttt < 5:360176/149‑1 (MQ=255) gCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGttttt < 5:78975/149‑1 (MQ=255) cAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTAt > 6:54630/1‑149 (MQ=255) ggCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATgg < 1:295252/149‑1 (MQ=255) ccTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGgcag > 8:267041/1‑149 (MQ=255) ccTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGgcag > 5:325024/1‑149 (MQ=255) ccTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGgcag > 5:369991/1‑149 (MQ=255) ccTCAGCGCCCAGCGCCGAAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACACCTTCGATGAAGATATTCCGTTCTGATCAGAGCGGT‑AGCCAGATCAGCAAGACCAGAAAC‑CCAGAGCAGTAGCCCTGGGATTTTTTATGGgcag > 6:84328/1‑149 (MQ=255) cccagcgccGCAACAGCCTGCGCCGCAGCCNGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTGTTTTTATGGGCCGCACcgcg > 1:34632/1‑148 (MQ=255) cccagcgccGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGt < 6:325024/149‑1 (MQ=255) cccagcgccGCAACAGCCTGCGCCGCAGCCAGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTGTTTTTATGGGCAGCACcgcg > 1:28924/1‑148 (MQ=255) gcgccGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTAt > 6:43958/1‑147 (MQ=255) gcgccGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCa < 2:13356/149‑1 (MQ=255) cgcAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCa > 5:104447/1‑149 (MQ=255) cAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATc > 7:162315/1‑149 (MQ=255) cAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATc > 8:114477/1‑149 (MQ=255) cAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATc < 8:89520/149‑1 (MQ=255) gCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCttt < 2:66091/149‑1 (MQ=255) gCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCttt < 6:369991/149‑1 (MQ=255) cTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCttt > 4:335968/1‑147 (MQ=255) cTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCa < 5:54630/149‑1 (MQ=255) cgccgcAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAg > 6:97237/1‑147 (MQ=255) ccgcAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAg > 8:107981/1‑148 (MQ=255) ccgcAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGGTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGa < 6:193116/149‑1 (MQ=255) cgcAGCCGGCGGCTGACTTCGACAGCTTCGATGACTATATTCCGTTCTGATCAGAGCGGTAAGGGCGTTCAGCAAGACCAGAAAC‑CCAGGCCAGTTGCCCTGGCTTTTTTTATGTGCAGCAACGCGTATCAGGCATCGCTATCAGTAg > 1:297731/1‑148 (MQ=255) cgcAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGaa > 6:123670/1‑149 (MQ=255) aCTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCg < 7:114477/148‑1 (MQ=255) cTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGc < 7:107981/149‑1 (MQ=255) cTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGATTTTTTATGGGCAGCACCGCGTATCATGAATCGCTTTCAGTAGAACAACAGGGGCTCAGGc > 4:361703/1‑149 (MQ=255) gACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGaa < 7:128674/148‑1 (MQ=255) aCAGCTTCGATGACGATATTGCGTTGTGATCAGAGCGGT‑AGGGGGTTCAGCAAGACCAGAAAC‑CCAGGGCCGTTGCCCTGGGGTTTTTTATGGGCAGCACCGCGTATCCGGCATGGCGTTCAGTATAACAACCGGGGCTCCGGCGAAta > 8:67781/1‑148 (MQ=255) aCAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATggg > 2:167877/1‑94 (MQ=255) aCAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATggg < 1:167877/94‑1 (MQ=255) cTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGTGGCTCCGGCGAATCcagc < 4:176458/149‑1 (MQ=255) cTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCcag > 4:139277/1‑148 (MQ=255) ttCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCcag > 3:279243/1‑147 (MQ=255) ttCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCcag > 1:22252/1‑147 (MQ=255) ttCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCcag > 7:136535/1‑147 (MQ=255) cGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAgg > 8:4329/1‑149 (MQ=255) cGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGCCTTGc > 3:143633/1‑148 (MQ=255) cGATATTCCGTTCTGAACAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGcc < 7:26333/149‑1 (MQ=255) gATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGGCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGccg > 6:107630/1‑148 (MQ=255) ttCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCtt < 7:267041/149‑1 (MQ=255) cGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTTCGGCGAATCCAGCAGGCTTGCCAGCTTGGt < 3:335968/149‑1 (MQ=255) cGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTgg < 6:355115/148‑1 (MQ=255) cGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTgg < 7:60706/148‑1 (MQ=255) gTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGt > 1:345839/1‑148 (MQ=255) cTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAg < 3:139277/148‑1 (MQ=255) tGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAACACCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAgg > 1:67740/1‑149 (MQ=255) tGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGcc < 7:259791/136‑1 (MQ=255) tGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGcc > 8:259791/1‑136 (MQ=255) gATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAggg > 4:59622/1‑148 (MQ=255) aTCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGGAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGc > 4:166511/1‑148 (MQ=255) aTCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAggg < 8:136535/147‑1 (MQ=255) aTCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAgg < 5:43958/146‑1 (MQ=255) aTCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAgg < 5:316194/146‑1 (MQ=255) tCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCa > 2:356731/1‑148 (MQ=255) agagCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑ACAGGCCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCCTATCAGGCAACGCTTTCACTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAg > 1:68413/1‑149 (MQ=255) gagCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCa > 6:337079/1‑90 (MQ=255) gagCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGc > 7:75061/1‑149 (MQ=255) cGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCa < 1:200202/149‑1 (MQ=255) t‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGGTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGCGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGtt < 6:287251/149‑1 (MQ=255) ggCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCtt > 8:60077/1‑149 (MQ=255) cGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTgg < 3:361703/149‑1 (MQ=255) gTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTggc > 5:83227/1‑149 (MQ=255) gCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCaaa < 3:222290/130‑1 (MQ=255) gCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCaaa > 4:222290/1‑130 (MQ=255) cAAGACCAGACAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTgg < 6:196826/149‑1 (MQ=255) cAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTgg > 6:377671/1‑149 (MQ=255) cAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTgg < 7:67781/149‑1 (MQ=255) cAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTgg < 7:14501/143‑1 (MQ=255) cAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTgg > 8:14501/1‑143 (MQ=255) cAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCa < 4:279243/149‑1 (MQ=255) aGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCAt < 3:166511/149‑1 (MQ=255) aaaC‑CCAGGGCAACTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAg < 6:114969/114‑1 (MQ=255) aaaC‑CCAGGGCAACTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAg > 5:114969/1‑114 (MQ=255) aC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAgg < 8:162315/149‑1 (MQ=255) c‑ccAGGGCAACTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCtt < 8:14211/97‑1 (MQ=255) c‑ccAGGGCAACTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCtt > 7:14211/1‑97 (MQ=255) c‑ccAGGGCAACTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAggg > 5:167756/1‑149 (MQ=255) ccAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGc > 7:186777/1‑149 (MQ=255) aGGGCAACTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGCGa > 1:222406/1‑149 (MQ=255) gggCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGCGAt < 2:22252/149‑1 (MQ=255) gCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGCGATgc < 1:356731/149‑1 (MQ=255) gCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGCGATgc > 4:122199/1‑149 (MQ=255) gTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCCGGGCAAAGCCCGGTTCTTGGCGGCTGGGTGCGATCAGGGCGATGCGca > 6:10323/1‑149 (MQ=255) | CAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCGCCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGATCAGAGCGGT‑AGGGCGTTCAGCAAGACCAGAAAC‑CCAGGGCAGTTGCCCTGGGTTTTTTTATGGGCAGCACCGCGTATCAGGCATCGCTTTCAGTAGAACAACCGGGGCTCCGGCGAATCCAGCAGGCTTGCCAGCTTGGTCAGGGCAAAGCCCAGTTCTTGGCGGCTGGGTGCCATCAGGGCGATGCGCA > NC_002947/571470‑571765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |