Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 644,472 | G→A | 7.2% | T182I (ACT→ATT) | acoA ← | acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 644,472 | 0 | G | A | 7.2% | 160.8 / 2.1 | 56 | T182I (ACT→ATT) | acoA | acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha |
Reads supporting (aligned to +/- strand): ref base G (20/31); new base A (2/2); total (23/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.82e-01 |
CTTGCCCGGAGCGGGCGCGCTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTT > NC_002947/644326‑644620 | cTTGCCCGGAGCGGGCGCGCTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTg < 1:23186/149‑1 (MQ=255) ttGCCCGGAGCGGGCGCGCTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTgg > 6:157281/1‑149 (MQ=255) ccGGAGCGGGCGCGCTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTc > 6:141691/1‑149 (MQ=255) cGGGCGCGCTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTa < 4:129289/149‑1 (MQ=255) cgcTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCgtt < 7:279514/149‑1 (MQ=255) gcTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCgttg < 8:35836/149‑1 (MQ=255) gATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTtct > 3:365252/1‑149 (MQ=255) gATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTtc < 2:120656/148‑1 (MQ=255) aGCGCCGGCGGCCTCGTATACCGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGGTTCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGcc < 1:292502/149‑1 (MQ=255) cggcggCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAATGGCCTCGGCGTAGCCGTTGTTCTCGGCCACg > 4:17404/1‑146 (MQ=255) cggcggCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGAACAGTTGGAGGCAATGGCCTCGGCGTAGACGTTGTTATCGGCCACg > 2:286822/1‑146 (MQ=255) gcggcCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGAt < 7:224601/149‑1 (MQ=255) gcggcCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGAt < 3:318647/149‑1 (MQ=255) cTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATgcagg < 8:68252/149‑1 (MQ=255) gTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATgcagggc < 5:157281/148‑1 (MQ=255) gTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATgcagggc < 6:4033/148‑1 (MQ=255) ggCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCa > 1:272333/1‑149 (MQ=255) ggCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCa > 3:309992/1‑149 (MQ=255) gCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCAGGCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCATTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAACATGCAGGGCAGGTTCa > 1:94030/1‑149 (MQ=255) gCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCAt < 4:8594/149‑1 (MQ=255) aaaGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGa < 5:248138/149‑1 (MQ=255) agaagTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATc < 4:28031/149‑1 (MQ=255) agaagTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCCTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATc < 1:264990/149‑1 (MQ=255) gaagTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATg < 4:231271/130‑1 (MQ=255) gaagACAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATg > 3:231271/1‑130 (MQ=255) aagTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGATGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCAAGATCGa > 3:275576/1‑149 (MQ=255) agTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGTCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGAc < 2:177336/149‑1 (MQ=255) aaaGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATgcagggc < 6:157520/130‑1 (MQ=255) aaaGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATgcagggc > 5:157520/1‑130 (MQ=255) aaaGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCAt > 3:56907/1‑138 (MQ=255) aaaGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCAt < 4:56907/138‑1 (MQ=255) aaaGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGcc > 4:64550/1‑148 (MQ=255) aaGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATCCAGGGCAGGTTCATGATCGACGCCAt < 1:10256/149‑1 (MQ=255) ccGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGtt < 5:337565/149‑1 (MQ=255) gTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCa < 5:94425/149‑1 (MQ=255) tCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCAt < 4:365252/149‑1 (MQ=255) ggTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCt > 8:113317/1‑149 (MQ=255) gACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCg > 2:51826/1‑148 (MQ=255) gCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATa > 4:277810/1‑149 (MQ=255) tGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACgg > 6:233248/1‑149 (MQ=255) gCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACCGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGc > 4:215586/1‑149 (MQ=255) a‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGccc < 7:113317/149‑1 (MQ=255) cgcgGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCGTGGCCGCGAATACGGCGCCCTCGTGGGCTGgcccc > 4:306756/1‑148 (MQ=255) cgGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATc < 3:215586/149‑1 (MQ=255) ggTCTGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAATGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATAGGGCGCCCTCGTTGGATGCCCCATCg < 1:286822/149‑1 (MQ=255) ggTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCg > 2:286931/1‑149 (MQ=255) ggTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAATGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCg < 3:17404/149‑1 (MQ=255) aTGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCgaagaa < 5:141691/149‑1 (MQ=255) gtgG‑TCGCAGGCTGCGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAgg > 3:319067/1‑149 (MQ=255) ggACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCAt > 3:285482/1‑149 (MQ=255) gAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGc < 6:142210/107‑1 (MQ=255) gAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGc > 5:142210/1‑107 (MQ=255) gAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCtt < 1:286931/149‑1 (MQ=255) gAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCtt < 4:309992/149‑1 (MQ=255) aGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTg < 4:285482/149‑1 (MQ=255) gggaGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCTGCCCTTGa < 2:94030/146‑1 (MQ=255) gTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCtt < 3:306756/149‑1 (MQ=255) | CTTGCCCGGAGCGGGCGCGCTCGATGGCAGCGCCGGCGGCCTCGTATACGGCAAAGAAGTCAAAGCCGTCGATGGTGACGCCTGGCATGCCGAAGCCGGCA‑GCGCGGTCGGCAATGTGG‑TCGCAGGCTACGGACCAGTTGGAGGCAGTGGCCTCGGCGTAGCCGTTGTTCTCGGCCACGAAGATGCAGGGCAGGTTCATGATCGACGCCATGTTCATGGCCTCGAATACGGCGCCCTCGTTGGATGCCCCATCGCCGAAGAAGGCTACCGACACGTCATCGCGGCCCTTGAGCTT > NC_002947/644326‑644620 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |