| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 650,246 | A→G | 8.1% | intergenic (‑90/+10) | accB ← / ← aroQ‑I | acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 650,246 | 0 | A | G | 8.1% | 243.0 / 9.3 | 86 | intergenic (‑90/+10) | accB/aroQ‑I | acetyl‑CoA carboxylase biotin carboxyl carrier subunit/type II 3‑dehydroquinate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (40/39); new base G (2/5); total (42/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01 | |||||||||||
GTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGTTTG > NC_002947/650100‑650394 | gtcgATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAgg < 8:129230/149‑1 (MQ=255)gtcgATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAgg < 5:229626/149‑1 (MQ=255) tcgATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAggg < 2:16086/149‑1 (MQ=255) tGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCTGGCCTAAGTGGGCCGGGGttc < 4:123940/148‑2 (MQ=255) ccAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCTGGCCTAAGTGGGCCGGGGttcga < 5:1121/148‑4 (MQ=255) ccAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTtca < 7:21692/149‑1 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCTGGCCTAAGTGGGCCGGGGttcgaga < 8:154363/149‑6 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTtcat > 2:332210/1‑149 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTtca > 7:171740/1‑148 (MQ=255) cAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTAAGGCCAGGGTTTtca > 5:180206/1‑148 (MQ=255) ctctTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCAtt < 1:193081/149‑1 (MQ=255) agcagcTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTTAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCtg > 7:312387/1‑149 (MQ=255) gcagcTCGATGAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAACGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCtgt < 4:151325/149‑1 (MQ=255) gcagcTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCtgt < 5:83857/149‑1 (MQ=255) gcagcTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCtgt > 2:248534/1‑149 (MQ=255) gcagcTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCtgt < 1:149075/149‑1 (MQ=255) gATCAGTTTCTTGACTTTACGGATATCCTTTAATCATCAACTCCCAAAGGTTCTGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCGACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTg < 1:331587/148‑1 (MQ=255) gATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCTACTCGAACCCTGGCCTAAGTGGGCCGGGGttcgaga < 1:246931/131‑6 (MQ=255) gATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCTGGCCTAAGTGGGCCGGGGttcgaga > 2:246931/1‑125 (MQ=255) gATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGtt < 1:47436/147‑1 (MQ=255) gATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTAAGGTAAGGGGGCGAAATACAAAAAACGTAAAAGAAACGTTTAT‑ATAGAAACCCGGCCCAAATAGGCCAAGGTTTTAAAAATTTTGGCTTTTCGTTgg > 1:282799/1‑149 (MQ=255) aTCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCTGGCCTAAGTGGGCCGGGGttcgag > 3:315216/1‑124 (MQ=255) aTCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCTGGCCTAAGTGGGCCGGGGttcgag < 4:315216/128‑5 (MQ=255) aGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGc < 4:190800/149‑1 (MQ=255) gTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGcc < 3:192883/149‑1 (MQ=255) gTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGc > 4:48847/1‑148 (MQ=255) gTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTACGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGc > 1:83394/1‑148 (MQ=255) gaagttACGTATATCCCTTACTCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAgt‑‑tgt < 7:260987/144‑1 (MQ=255) aCTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTc < 2:318580/149‑1 (MQ=255) ccATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑Tc > 7:335870/1‑148 (MQ=255) cATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAgt‑‑tgtt > 2:73355/1‑134 (MQ=255) cATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAgt‑‑tgtt < 1:73355/134‑1 (MQ=255) cATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑Tc > 1:360256/1‑147 (MQ=255) aTTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAg > 6:142916/1‑149 (MQ=255) ttAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGttt < 7:119614/97‑1 (MQ=255) ttAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGttt > 8:119614/1‑97 (MQ=255) tAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAgc < 8:341313/136‑1 (MQ=255) tAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCAAgc > 7:341313/1‑136 (MQ=255) atcatcAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGcgcg > 8:198563/1‑137 (MQ=255) atcatcAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGcgcg < 7:198563/137‑1 (MQ=255) tcatcaACTCCCAAAGGTTCGGTCAGGGGGAGAAATACAAAAAACGTATCTGAAACGTTTAT‑CTCGAACCCAGGCACACTTAGGCCAGGGTTTTAATAATTTGGGCTTTGCGTTGGCAGCCAGT‑‑TGTTCAAGAGAGGAC‑‑‑TCCCGGGc > 4:243055/1‑147 (MQ=255) catcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAg > 8:26074/1‑149 (MQ=255) atcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTTAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAg < 8:312387/148‑1 (MQ=255) atcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAgg < 3:48847/149‑1 (MQ=255) atcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAg < 1:248534/148‑1 (MQ=255) atcaACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAg < 8:171740/148‑1 (MQ=255) aaCTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGa > 8:82343/1‑149 (MQ=255) cTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATa < 2:360256/149‑1 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAggg > 3:256776/1‑136 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAggg < 4:256776/136‑1 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAAcc < 2:75900/149‑1 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAAcc > 2:307570/1‑149 (MQ=255) ccAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATAATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAAcc > 7:297018/1‑149 (MQ=255) ggTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGCCCAGGCGATAACCGATGGCGcc > 5:286146/1‑148 (MQ=255) gggCGAAATACAAAAAACGTATCTTAAACGTTTCT‑CTCGATCCCCGGCCCCCTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTCGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TACAGGGCCAGGCGAGAACCGCTGGCGCCGAGACCg > 5:286047/1‑148 (MQ=255) gggCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGc < 8:335870/149‑1 (MQ=255) gAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCg > 1:67626/1‑144 (MQ=255) aCAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAccc > 7:171622/1‑149 (MQ=255) cAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc < 5:142916/149‑1 (MQ=255) aaaaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 4:61361/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 8:342761/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 4:2106/1‑148 (MQ=255) aaaaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCAcccc > 3:361570/1‑148 (MQ=255) aaaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTa < 6:296338/149‑1 (MQ=255) aaaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTa > 8:277539/1‑149 (MQ=255) aaaaCGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTAc < 2:67626/149‑1 (MQ=255) tGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCg > 1:170399/1‑149 (MQ=255) tGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCg > 1:27363/1‑149 (MQ=255) tGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCg > 3:259569/1‑149 (MQ=255) gAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCg > 7:119729/1‑148 (MQ=255) aaaCGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCgg > 1:299017/1‑148 (MQ=255) aCGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaaa < 3:61361/149‑1 (MQ=255) cGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACTTCGGaaaa < 4:361570/149‑1 (MQ=255) cGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaaaa < 7:342761/149‑1 (MQ=255) cGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGaaaa < 6:278264/149‑1 (MQ=255) gTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAg > 4:157889/1‑149 (MQ=255) ct‑ctcGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAg < 7:26074/148‑1 (MQ=255) gAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAgtgg > 7:349296/1‑149 (MQ=255) gAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAg < 8:171622/146‑1 (MQ=255) aCCCCGGCCCACTTATGCCAGGTTTTTTATAATTTTGGCTGTGGGTTGGCAGCCATTCGTTTTCAACCGCGCCCCCTTCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGa < 1:307570/148‑1 (MQ=255) cccGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCGGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGAc > 4:328719/1‑149 (MQ=255) cccGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGGGAc > 4:268995/1‑149 (MQ=255) gCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCATACGGCAACATCGGAAAAGTAGGAGTGGTGACGGACAGGTTCGCGt > 7:63122/1‑149 (MQ=255) gaGGGTTTTCTTCATTTGGGCTGTGCGTTGGCAGGCTGT‑‑TGTTCCAGCGCGGAC‑‑‑TGCAGGGCCAGGCGATAACCGCTGGCGCCCAGACGGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGttt < 6:180206/148‑1 (MQ=255) cAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGttt < 3:2106/149‑1 (MQ=255) cAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGttt < 2:27363/149‑1 (MQ=255) cAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGttt < 2:170399/149‑1 (MQ=255) aGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGTTtg < 7:82343/149‑1 (MQ=255) | GTCGATGCCAGACTCTTCCAGCAGCTCGATCAGTTTCTTGACTTTACGGATATCCATTAATCATCAACTCCCAAAGGTTCGGTCAGGGGGCGAAATACAAAAAACGTATCTGAAACGTTTCT‑CTCGAACCCCGGCCCACTTAGGCCAGGGTTTTCATCATTTGGGCTGTGCGTTGGCAGCCAGT‑‑TGTTCCAGCGCGGAC‑‑‑TCCAGGGCCAGGCGATAACCGCTGGCGCCCAGACCGCAGATCACCCCTACGGCAACATCGGAAAAGTAGGAGTGGTGACGGAACGGTTCGCGTTTG > NC_002947/650100‑650394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |