| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,031,374 | T→C | 5.3% | V27A (GTC→GCC) | regA → | photosynthetic apparatus regulatory protein RegA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,031,374 | 0 | T | C | 5.3% | 215.1 / 2.1 | 76 | V27A (GTC→GCC) | regA | photosynthetic apparatus regulatory protein RegA |
| Reads supporting (aligned to +/- strand): ref base T (36/35); new base C (2/2); total (39/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.13e-01 | |||||||||||
TAGTCATGAACAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGTGCTGCTGCC > NC_002947/1031229‑1031521 | taGTCATGAACAGGGTGGCACCCTGACGGATCTGCGCCTGCACTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCCGGTCGAAAGCGAAGAGCTGCCGGACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGt < 2:238063/146‑1 (MQ=255)taGTCATGAACAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAACCCCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGt < 1:302933/148‑1 (MQ=255) gTCATGAACAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATg < 2:136581/148‑1 (MQ=255) tCATGAACAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGCCATgac > 3:5424/1‑147 (MQ=255) aTGAACAGGGTGGCACCCTGACAGAACTGCGCCTGACATATGGAAAGCTAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGTACGAAAGCGAAGAGCTGCCGCACCTGCAGCTGGTGCATGACGAATCCAACTTCACCCGGGACATGGccc > 2:52228/1‑149 (MQ=255) tGAACAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCg > 6:303510/1‑149 (MQ=255) gAACAGGGTGGCACCCTGAACGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGAGAAGAAAA‑‑ACAGGTCGAAAGCGAAGAGCTGCCGAACCTGCTGCTGGTGGATGAAGATGCCACCTTCCCCCGGTTCATGGccctg > 4:45058/1‑147 (MQ=255) gtcAGGGTGCCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCggg > 1:27187/3‑149 (MQ=255) aCAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGc < 4:157983/149‑1 (MQ=255) gggTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCAt < 8:192458/149‑1 (MQ=255) gggTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCAt < 4:17183/149‑1 (MQ=255) ggTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGCCATGACCCgggtgaa < 4:5424/148‑5 (MQ=255) ttGGCACACTGACCGAACTGCGCCTGCACTATTGCAAGCGAGTAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTTCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGACATGa < 3:45058/148‑1 (MQ=255) gTGGCACCCTGACCGAACTTCGCCTGCCCTATGGCAAGGGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAATAGCTGCCGCACCTGCTGCTGGTGGATTACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGa < 1:52228/149‑1 (MQ=255) ccTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTcg > 8:279067/1‑149 (MQ=255) ccTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTcg > 4:287819/1‑149 (MQ=255) cTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTcgc > 1:17841/1‑149 (MQ=255) gACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCgg > 2:299699/1‑149 (MQ=255) aCCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTcgcg < 8:190406/147‑1 (MQ=255) cgcCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCgtgt < 8:122009/148‑1 (MQ=255) gcCTGCCCTCTGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGa < 6:32089/149‑1 (MQ=255) gcCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGa < 5:384342/149‑1 (MQ=255) ccTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAg > 6:250057/1‑123 (MQ=255) ccTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAg < 5:250057/123‑1 (MQ=255) ccTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTg > 2:138046/1‑149 (MQ=255) ccTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTg > 5:80018/1‑149 (MQ=255) tATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGATCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGc > 6:294517/1‑148 (MQ=255) aaGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCt > 2:307404/1‑149 (MQ=255) gaatgaTGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGc > 8:227945/1‑149 (MQ=255) aatgaTGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGc > 7:74735/1‑138 (MQ=255) aatgaTGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGc < 8:74735/138‑1 (MQ=255) atgatgAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCtt < 7:46289/149‑1 (MQ=255) atgatgAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCt < 8:190322/148‑1 (MQ=255) tgatgaGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGCCATGACCCgggtgaa < 2:156812/97‑5 (MQ=255) tgatgaGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGCCATGACCCgggtgaa > 1:156812/1‑93 (MQ=255) gatgaGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGa > 2:115605/1‑149 (MQ=255) gatgaGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGa > 7:304421/1‑149 (MQ=255) gaGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTc > 3:133762/1‑149 (MQ=255) aGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTc < 6:80018/148‑1 (MQ=255) aGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCt > 1:236181/1‑149 (MQ=255) gCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTg < 5:307624/149‑1 (MQ=255) aagaaAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGcc > 7:38736/1‑149 (MQ=255) aaa‑‑CGAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGTCGATGCCACCTTCAGCCGGGTCTTGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTTAGCACTGCCAGTTCTGCCTAAGAAGGCTTGATTCTGGCCcag < 1:254106/148‑1 (MQ=255) ccAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAgg > 4:200147/1‑149 (MQ=255) aaGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCg > 2:195144/1‑148 (MQ=255) cGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGAc > 3:251566/1‑148 (MQ=255) gAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTa > 4:198099/1‑149 (MQ=255) gAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTa > 1:379616/1‑149 (MQ=255) gAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTa < 2:379616/149‑1 (MQ=255) gAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTa > 3:339423/1‑149 (MQ=255) aaGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTAc > 2:107611/1‑149 (MQ=255) agagCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACg < 1:67363/149‑1 (MQ=255) gCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGc < 8:325221/149‑1 (MQ=255) cGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTg < 1:300422/149‑1 (MQ=255) cACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGa < 7:227945/149‑1 (MQ=255) aCCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGAc < 5:303510/149‑1 (MQ=255) ctgctgGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGaa < 7:279067/149‑1 (MQ=255) tggtggATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCAATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAgatg < 4:251566/149‑1 (MQ=255) ggtggATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAgatgg > 6:237006/1‑149 (MQ=255) gtggATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCTCTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCTGGACCTGCCGGACTACGCCACGCTGGACCTGAAgatgg < 1:299699/148‑1 (MQ=255) gATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAgatggatg < 4:339423/148‑1 (MQ=255) gATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGatggatgg > 5:200630/1‑149 (MQ=255) gATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGCGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGatggatgg > 4:369908/1‑149 (MQ=255) tGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATCGCGACTCCg > 4:52075/1‑149 (MQ=255) ccACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCCGACTACGCCACGCTGGACCAGAAGATGGATGGCTACTCAGGc > 7:69675/1‑149 (MQ=255) cACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGcc > 7:113676/1‑149 (MQ=255) aCCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCt < 3:198099/149‑1 (MQ=255) ccTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTg < 6:200630/149‑1 (MQ=255) cTTCCCCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCGGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGATGGACCTGTAGATGGATGGCGACTCCGGCCTgg > 3:200371/1‑149 (MQ=255) ttCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGAcc > 3:361440/1‑121 (MQ=255) ttCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGAcc < 4:361440/121‑1 (MQ=255) cccGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctg < 1:107611/149‑1 (MQ=255) ccGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctgc > 4:143856/1‑149 (MQ=255) gggTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctgctg > 1:241986/1‑149 (MQ=255) ggTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctgctgc < 3:287819/149‑1 (MQ=255) ggTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctgctgc < 8:304421/149‑1 (MQ=255) ggTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctgctgc < 1:138046/149‑1 (MQ=255) ggTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGCGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGtgctgctgc < 3:369908/149‑1 (MQ=255) ctCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGTGCTGCTGcc > 3:32490/2‑149 (MQ=255) | TAGTCATGAACAGGGTGGCACCCTGACCGAACTGCGCCTGCCCTATGGCAAGCGAGGAGATGAATGATGAGCGAAGAAAA‑‑CCAGGTCGAAAGCGAAGAGCTGCCGCACCTGCTGCTGGTGGATGACGATGCCACCTTCACCCGGGTCATGGCCCGGGCCATGAGCCGTCGCGGTTTCCGTGTGAGCACTGCCAGTTCTGCCGAAGAAGGCTTGATTCTGGCCCAGCAGGACCTGCCGGACTACGCCACGCTGGACCTGAAGATGGATGGCGACTCCGGCCTGGTGCTGCTGCC > NC_002947/1031229‑1031521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |