| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 185,731 | C→G | 5.0% | G136G (GGG→GGC) | PP_0162 ← | ECF family RNA polymerase sigma‑70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 185,731 | 0 | C | G | 5.0% | 322.8 / 5.0 | 99 | G136G (GGG→GGC) | PP_0162 | ECF family RNA polymerase sigma‑70 factor |
| Reads supporting (aligned to +/- strand): ref base C (47/47); new base G (3/2); total (50/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
CGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCA > NC_002947/185583‑185879 | cGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGATGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGc > 5:60432/1‑149 (MQ=255) tttttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGccc > 2:317722/1‑149 (MQ=255) tttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGcccc < 6:7688/148‑1 (MQ=255) ttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTc > 3:220023/1‑149 (MQ=255) ttGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAACACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCt < 7:296940/148‑1 (MQ=255) tATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCa > 1:135669/1‑149 (MQ=255) aTCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCa < 2:86444/148‑1 (MQ=255) tCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGc < 2:22526/139‑1 (MQ=255) tCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGc > 1:22526/1‑139 (MQ=255) gCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGcc < 2:81798/149‑1 (MQ=255) cGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCcagcag < 4:183153/149‑1 (MQ=255) cGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCcagcag > 3:353824/1‑149 (MQ=255) cGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCcagcag > 4:76118/1‑149 (MQ=255) tCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATgc > 8:30986/1‑149 (MQ=255) gcATGGATTCAGCAGTCTTCTTCATAGCGCAGCACGTAGGAGTGATAGAGCTCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATgc < 6:315122/148‑1 (MQ=255) tGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATgcgc > 7:93173/1‑148 (MQ=255) ttCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACg > 6:139605/1‑148 (MQ=255) ttCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGt < 3:317905/149‑1 (MQ=255) gcagTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCt > 5:50540/1‑149 (MQ=255) cagTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCtt > 5:371994/1‑149 (MQ=255) gtcTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGTTCCCCATCTGTTCTGC‑GATGGCCTGATGCTTCAGCCCCTCGCAtt < 1:326169/116‑1 (MQ=255) gtcTTCATAGCGCAGCACGTAGAAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGtt > 8:116434/1‑149 (MQ=255) ttCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGCTCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGttt > 5:377566/1‑147 (MQ=255) ttCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGttt > 3:319041/1‑147 (MQ=255) cATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGttggcgg > 6:226832/1‑144 (MQ=255) cATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGa < 8:34819/147‑1 (MQ=255) cATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAgg > 2:338261/1‑149 (MQ=255) cATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAg < 1:105194/148‑1 (MQ=255) tAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGcc > 8:224903/1‑149 (MQ=255) tAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACATACCTTggg < 5:308747/140‑1 (MQ=255) tAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATACCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACATACCTTggg > 6:308747/1‑140 (MQ=255) cgcAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTc > 4:149545/1‑149 (MQ=255) agcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAg > 7:339651/1‑149 (MQ=255) gcaCGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGc < 2:135669/149‑1 (MQ=255) gTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGc > 8:11400/1‑149 (MQ=255) gTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGc < 2:196035/149‑1 (MQ=255) gCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGt < 1:338261/148‑1 (MQ=255) gCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTg > 3:217716/1‑149 (MQ=255) gCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGATGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGt < 6:60432/148‑1 (MQ=255) gTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCtt > 7:146913/1‑120 (MQ=255) gTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCaa < 4:217716/149‑1 (MQ=255) gTGATAGAGCGCATTGCCTATGTATCGCTCAACGGTGCGCACGGAGCTCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCtt < 8:146913/120‑1 (MQ=255) aTAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGa < 3:28861/125‑1 (MQ=255) aTAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATAc > 2:336290/1‑149 (MQ=255) agagCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCAtt > 2:169870/1‑87 (MQ=255) agagCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCAtt < 1:169870/87‑1 (MQ=255) gagCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGc < 1:317722/148‑1 (MQ=255) cgcATTGGCGATGTAGCGCTCAACGGTGCGCACGGATATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCaa < 7:15898/149‑1 (MQ=255) gcATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAg < 3:78214/149‑1 (MQ=255) aTTGGCGATGTAGCTCTCAACGGTGCGCACGGAGAGCCCCATCTGTTCGGC‑GATGGCCGGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAg < 4:200929/147‑1 (MQ=255) aTTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGc > 5:182856/1‑148 (MQ=255) gCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTc < 3:76118/149‑1 (MQ=255) cGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGCGGATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCaa > 1:83591/1‑142 (MQ=255) cGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCaa < 2:83591/141‑1 (MQ=255) gATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCca < 4:24986/149‑1 (MQ=255) tGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCcagc < 7:30986/149‑1 (MQ=255) aGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCcagcag > 1:146148/1‑148 (MQ=255) aGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGACGGAATTCGCGACGTACATTGGGTTTGAGGCCGTCGCGCATGCTTGCAATAAGCTCAAGCAATTCcagcag > 3:224787/1‑148 (MQ=255) cgcTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCATCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCTAGCATGCGTGCAATACGCTCAAGCAATTCcagcagcag > 1:238674/1‑149 (MQ=255) cTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCt > 4:288127/1‑149 (MQ=255) cTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCt > 5:238484/1‑149 (MQ=255) aaCGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCcagcagca > 1:140265/1‑143 (MQ=255) aaCGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTcgc > 4:131161/1‑149 (MQ=255) cgcACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGc < 8:470/102‑1 (MQ=255) cgcACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGc > 7:470/1‑102 (MQ=255) cACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGa > 7:310751/1‑149 (MQ=255) cACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGa < 8:93173/149‑1 (MQ=255) cGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACt < 3:288127/149‑1 (MQ=255) agaTCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 5:318082/149‑1 (MQ=255) agaTCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 8:339651/149‑1 (MQ=255) agaTCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 1:336290/149‑1 (MQ=255) gTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg < 8:217537/137‑1 (MQ=255) gTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAg > 7:217537/1‑137 (MQ=255) ttCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGTGGACCAGTGCt < 2:63930/148‑1 (MQ=255) tgC‑GAGGGGCTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCg > 8:332067/2‑149 (MQ=255) ggC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGGCAGCAGTAATGCGCGACGTACCTTGGGTTTGAGGCGGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCg < 4:353824/149‑1 (MQ=255) ggC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCATGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTcc < 7:143268/148‑1 (MQ=255) c‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTc > 3:240904/1‑145 (MQ=255) c‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTc < 4:240904/145‑1 (MQ=255) gaggggcTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGca > 8:227010/7‑149 (MQ=255) gATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGca > 1:287393/1‑149 (MQ=255) gATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACATTGGGTTTGAGGCCGTCGAGCATGCGTGCAATAAGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGca > 1:292275/1‑149 (MQ=255) aggggcTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc > 1:28134/6‑134 (MQ=255) aggggcTGAAGCATCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGAc < 2:28134/129‑1 (MQ=255) ccTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATgg < 7:96854/149‑1 (MQ=255) cTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATggg > 5:113335/1‑149 (MQ=255) tGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGc > 4:336753/1‑149 (MQ=255) aTGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTGAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGcc > 5:201067/1‑148 (MQ=255) gcatCAGGCCATCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCaaa < 7:227010/146‑1 (MQ=255) cTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCaaa < 6:371994/148‑1 (MQ=255) cTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCaaa < 5:139605/148‑1 (MQ=255) ttCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGcc > 1:192669/1‑144 (MQ=255) ttCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGcc < 2:192669/144‑1 (MQ=255) cAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATGCGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGcca > 3:242003/1‑148 (MQ=255) cAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGc < 6:50540/147‑1 (MQ=255) cAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCt > 5:150853/1‑149 (MQ=255) cAGCCCCTCGCATTGAGCCAGCAGGAAGGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATGCGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGc < 4:242003/147‑1 (MQ=255) gCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTcc < 6:113335/149‑1 (MQ=255) ccccTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCa < 6:377566/149‑1 (MQ=255) ccccTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCGTACGGCACATGGGCCAGAGCCTc > 8:75815/1‑147 (MQ=255) | CGTTTTTGTATCAGGGCGTGCGACGGTCATGGATTCAGCAGTCGTCTTCATAGCGCAGCACGTAGCAGTGATAGAGCGCATTGGCGATGTAGCGCTCAACGGTGCGCACGGAGATCCCCATCTGTTCGGC‑GATGGCCTGATGCTTCAGCCCCTCGCATTGAGCCAGCAGGAATGCGCGACGTACCTTGGGTTTGAGGCCGTCGAGCATGCGTGCAATACGCTCAAGCAATTCCAGCAGCAGCTCGCGGGTCTCGACTGAGGGGACCAGTGCTTCCGGCACATGGGCCAAAGCCTCCA > NC_002947/185583‑185879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |