| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,229,547 | G→C | 9.5% | Q909H (CAG→CAC) | PP_1072 → | leucine‑rich repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,229,547 | 0 | G | C | 9.5% | 229.4 / 7.7 | 78 | Q909H (CAG→CAC) | PP_1072 | leucine‑rich repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (36/34); new base C (4/4); total (40/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
GGCGTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTGCC > NC_002947/1229399‑1229693 | ggCGTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAg > 6:49093/1‑149 (MQ=255) gTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTgg > 8:54479/1‑149 (MQ=255) ttCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAg < 7:215085/148‑1 (MQ=255) ttCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAgg < 7:39354/149‑1 (MQ=255) aCCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGa < 3:98191/148‑1 (MQ=255) cAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 7:28161/1‑149 (MQ=255) aaGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGcc < 4:122900/149‑1 (MQ=255) tttCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTaa > 3:64485/1‑149 (MQ=255) ttCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAAc > 7:195618/1‑149 (MQ=255) gacgaTGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCAc < 2:204955/149‑1 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc < 7:141365/129‑1 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 8:141365/1‑129 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAggctct > 8:196218/1‑124 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAggctct > 8:201668/1‑124 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAggctct < 7:201668/128‑5 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAggctct < 7:196218/128‑5 (MQ=255) aCGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTa > 8:190242/1‑149 (MQ=255) cGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTAc < 5:49093/149‑1 (MQ=255) ggggAGCTACAAGCCTATCTGATTGACCTCATGGAGCGGCGCGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGACTGCGCCAGTGGCGCAGGCATGCCAGTAAACCACTGGACGCTTTAcg > 7:161155/1‑149 (MQ=255) gCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACgccgcc < 5:299399/149‑1 (MQ=255) tACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGt > 8:155882/1‑149 (MQ=255) cAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTc < 2:195773/148‑1 (MQ=255) gCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGAGTCAGAACCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGt > 6:275430/1‑149 (MQ=255) cTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCg > 5:142759/1‑149 (MQ=255) cTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCg > 5:180378/1‑149 (MQ=255) tATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGc > 7:232815/1‑149 (MQ=255) aTCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGc > 8:7182/1‑148 (MQ=255) tCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCt > 5:379779/1‑148 (MQ=255) ccTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTAc > 5:170668/1‑149 (MQ=255) aTGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCTTCGGGTCGCTACTGCCGTACGGCg < 7:54479/149‑1 (MQ=255) aTGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACgg < 8:195618/147‑1 (MQ=255) ggAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCg > 5:240826/1‑147 (MQ=255) gAGCGGCGCGTAGGGTTGTGGGAGCACTACAGCCAGCTGCCGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAg < 6:12954/149‑1 (MQ=255) gcggcgAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCt > 7:30211/1‑149 (MQ=255) ggcgAGTAGGTTTGTGGTATCACTACAGCCAGCTGACGGGTCTGTTGGCGCGCCTGCGTCAGAGCATGCGCCAGTGGCTCAGGTATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTgg < 8:30211/149‑1 (MQ=255) gcgAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggc < 7:190242/149‑1 (MQ=255) gggTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGgcgc > 5:73699/1‑147 (MQ=255) ggTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGgcgc > 8:218665/1‑146 (MQ=255) ttGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggcggc > 3:241323/1‑142 (MQ=255) ttGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggcggc < 4:241323/142‑1 (MQ=255) gtgGGAGCACTACAGCCAGCTGACGGGGCAGTTCGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATaa > 5:311700/1‑149 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGt > 3:302197/1‑103 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGt < 4:302197/103‑1 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAAcc < 7:7182/148‑1 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTAATGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcg > 4:205459/1‑149 (MQ=255) aGCACTACAGCCAGCTGACTGGGAAGTTGGCGCGGCTGCGTCAGAGGCTGCGGCAGTGGGGCAGGGATGCCTGTAAGCCACTGGACGCTTTACGACGCCGTCGGGTCGCTACTGCCGTACGGCGATGCTGTCGTCGCAAGATAACcgac < 4:294674/149‑1 (MQ=255) aGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGAGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGACGTCGGTTCGCTACTGCCGTACGGCGAAGCTGGATGAGCAAGATAACcgac > 3:35100/1‑149 (MQ=255) cACTACAGCCAGCTGAGGGGGCTGTGGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgacga < 8:28161/149‑1 (MQ=255) cACTACAGCCAGCTGAGGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgacga < 5:139115/149‑1 (MQ=255) cagccagcTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCg > 2:24928/1‑149 (MQ=255) agccagcTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCga < 6:379779/149‑2 (MQ=255) gACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTAcg > 7:283002/1‑149 (MQ=255) aCGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTAc < 7:218665/147‑1 (MQ=255) gggCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGt > 4:81868/1‑98 (MQ=255) gggCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGt < 3:81868/98‑1 (MQ=255) ggCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTg < 8:283002/149‑1 (MQ=255) aGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGatc < 5:3802/149‑1 (MQ=255) aGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGat > 2:341386/1‑148 (MQ=255) gcgcgcCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAg < 6:142759/149‑1 (MQ=255) gcgcgcCTGCGTCAGACCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAg < 5:275430/149‑1 (MQ=255) cgcgcCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGc < 6:240826/149‑1 (MQ=255) gcgcCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCg > 1:146493/1‑149 (MQ=255) cTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATGATCAGCgcgta < 1:33939/149‑5 (MQ=255) cTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGgaga < 6:170668/149‑1 (MQ=255) cTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGga > 6:99305/1‑147 (MQ=255) cTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGga > 8:68075/1‑147 (MQ=255) tGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCg > 7:237771/1‑144 (MQ=255) gagCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCg > 1:33506/1‑149 (MQ=255) agCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGGCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCgg < 8:201490/149‑1 (MQ=255) ccTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGTGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGa < 6:311700/149‑1 (MQ=255) ccTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGa < 2:33506/149‑1 (MQ=255) ccTGCGCCACTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCgg > 1:164386/1‑147 (MQ=255) tGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGt > 4:356779/1‑149 (MQ=255) gcgcCACTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGa > 3:194503/1‑122 (MQ=255) gcgcCACTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGa < 4:194503/122‑1 (MQ=255) gcCAGTGGCGCAGGGATGCCAGTAACCCGCTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTg > 3:214561/1‑149 (MQ=255) gcCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTg > 4:261897/1‑149 (MQ=255) ccAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGCGCGTATCGGGAGTCTGc < 2:368513/149‑1 (MQ=255) cAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCATATCGGGAGTCTGcc < 2:146493/149‑1 (MQ=255) | GGCGTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTAACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTGCC > NC_002947/1229399‑1229693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |