Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,487,099 | A→G | 8.7% | intergenic (+115/+15) | yhdZ → / ← degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,487,099 | 0 | A | G | 8.7% | 120.1 / 3.3 | 47 | intergenic (+115/+15) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
Reads supporting (aligned to +/- strand): ref base A (26/16); new base G (2/2); total (29/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.39e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.61e-01 |
GTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCTG > NC_002947/1486960‑1487245 | gttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGcc < 1:46761/148‑1 (MQ=255) ccTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCCCTACCCCAGGTTTAGCGCTGGGGTTGGAGCCTGCGTAATTACTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCggg > 3:178971/1‑149 (MQ=39) aGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGTTGCGGCCCttcgcgg < 7:100055/149‑7 (MQ=38) ccTCCATCGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCCCGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGCGCCTGCGTAATTCCTGGGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTctct < 4:18222/149‑1 (MQ=39) cTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTctct > 1:90200/1‑148 (MQ=255) gTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTAGGGCTGGCGTTGGAGCCTGCGTTATTCCTGGGGGCGCGGGCGGGCCCGCGAACGGCCGCCACGCGGCCCTGGGTTTATTTGTCTTCCTGGCTGGCAGc > 1:315230/1‑149 (MQ=38) ggCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTTGCGCTGGCGTTGGAGCCTGCGTAATTGCTGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCGTGGGTTATTTGTCTTGCTGGCTGGCAGCCGgcg > 1:200595/1‑149 (MQ=37) aCGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTc > 7:339359/1‑149 (MQ=255) gCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCgg > 3:301410/1‑149 (MQ=255) gCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCgg > 4:109752/1‑149 (MQ=255) ccGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAg > 7:21598/1‑136 (MQ=255) ccGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAg < 8:21598/136‑1 (MQ=255) ccACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCg > 6:384647/1‑117 (MQ=255) ccACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCg < 5:384647/117‑1 (MQ=255) cacaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCt > 2:200549/1‑149 (MQ=255) acaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt > 7:188883/1‑149 (MQ=255) acaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt > 3:46592/1‑149 (MQ=255) acaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCt > 5:231782/1‑148 (MQ=255) acaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTAGGCGATCAGCtt > 4:26740/1‑149 (MQ=255) caGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCtt > 2:368154/1‑148 (MQ=255) tttAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAct < 4:301410/149‑1 (MQ=255) aGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGACGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgct > 5:89631/1‑149 (MQ=255) cggtGGCTTTGTAGCCGGCGTAATTCTGGTGGGTGGGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACtgctgc < 3:58145/146‑1 (MQ=255) gcTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCg < 8:261936/114‑1 (MQ=255) gcTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCg > 7:261936/1‑114 (MQ=255) ggCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGt > 8:39686/1‑149 (MQ=255) ggCTTTGGAGCCTGCGTAATTCCTGTGGGAGCCGGCGTGCCCGCGAAGGGCCGCAACGCCGCCCTGGGTTTATTTGTCTTCCTTGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCCCCTCGGCGATGAGCATCAACTGCTGCCCGt > 1:29320/1‑149 (MQ=255) gCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCa > 4:347941/1‑90 (MQ=255) gCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCa < 3:347941/90‑1 (MQ=255) gccgCCGGCGTAATGCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTTGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTgcgc < 2:200595/145‑1 (MQ=255) gCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCa < 1:368154/149‑1 (MQ=255) ccTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGtt < 2:315230/148‑1 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTAtctt > 4:321440/1‑149 (MQ=255) gggAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTAtcttc > 3:168184/1‑149 (MQ=255) gggCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTg < 4:178971/149‑1 (MQ=255) gggCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTg < 2:90200/149‑1 (MQ=255) gCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTggg < 1:200549/149‑1 (MQ=255) gCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCg > 8:5539/1‑86 (MQ=255) acccaGGGCCGCGTTGCGGCCCTTGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTgg > 4:102383/5‑140 (MQ=255) acccaGGGCCGCGTTGCGGCCCTTGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTgg < 3:102383/136‑1 (MQ=255) acccaGGGCCGCGTTGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATcc > 5:209098/5‑149 (MQ=255) gAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTAGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCcgc < 3:26740/149‑1 (MQ=255) ccGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTAcc > 8:128926/1‑149 (MQ=255) cGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGc < 2:154055/64‑1 (MQ=255) cGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGc > 1:154055/1‑64 (MQ=255) cGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCt > 1:224577/1‑149 (MQ=255) gCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGCTCCGCGCTTCCTg > 6:366341/1‑149 (MQ=255) | GTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCTG > NC_002947/1486960‑1487245 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |