| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,237 | C→T | 5.9% | S248L (TCG→TTG) ‡ | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,237 | 0 | C | T | 5.9% | 258.4 / 3.5 | 85 | S248L (TCG→TTG) ‡ | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (40/40); new base T (2/3); total (42/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.22e-01 | |||||||||||
CCACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGATCAC > NC_002947/195090‑195384 | ccACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCg < 4:188331/149‑1 (MQ=255) cACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGGTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCgg > 5:155304/1‑149 (MQ=255) cACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTc < 4:241766/147‑1 (MQ=255) cACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTc > 3:241766/1‑147 (MQ=255) cACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCgg > 6:180915/1‑149 (MQ=255) aCCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGc > 6:159906/1‑149 (MQ=255) cGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCa > 6:36674/1‑149 (MQ=255) cGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCa < 2:249460/149‑1 (MQ=255) gTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGGCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTCGCCAGATTTCGGCCACCGt > 1:265610/1‑148 (MQ=255) tCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCGAAATCTGGCCACCGtcg < 5:198738/149‑3 (MQ=255) tCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGa < 3:285777/149‑1 (MQ=255) agccgcCGACCACCAACCTGCTAATTACTCAGTCCAATGGTGCCGAGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTAACATCGACGGTCGCCAGATTTCGGCAACCGTGa > 2:345940/4‑147 (MQ=255) aGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGa > 1:116736/1‑147 (MQ=255) ggCGCCGACCACCATCCTGGTAATGACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGGGGCCAGATTTCGGCCACCGTGACAg < 6:260697/149‑1 (MQ=255) gcgcCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAgg < 5:132354/149‑1 (MQ=255) gcgcCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAg < 4:35987/148‑1 (MQ=255) gcCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGgta < 2:70519/149‑1 (MQ=255) ccGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGgtag < 4:109530/149‑1 (MQ=255) accaccAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGTCTGGGCAGACCAGTGGTAGGGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTAc < 1:119606/149‑1 (MQ=255) accaACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCGAAATCTGGCCACCg > 2:304321/1‑133 (MQ=255) accaACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCGAAATCTGGCCACCg < 1:304321/133‑1 (MQ=255) accaACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCgg < 8:111139/149‑1 (MQ=255) caACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCggtg > 1:189640/1‑149 (MQ=255) caACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCggtg < 4:250054/149‑1 (MQ=255) aaCCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCggtgg > 3:180406/1‑149 (MQ=255) tAATTACTCTGTCCTATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCggg < 1:345940/149‑1 (MQ=255) tAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGcggcgg < 7:341070/148‑1 (MQ=255) tAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCggg < 8:19113/149‑1 (MQ=255) tAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCggg < 5:90419/149‑1 (MQ=255) aTTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCt < 8:173286/149‑1 (MQ=255) aCTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCg < 8:169758/111‑1 (MQ=255) aCTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCg > 7:169758/1‑111 (MQ=255) aCTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGAc > 4:357516/1‑149 (MQ=255) ctctGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACg < 5:159906/149‑1 (MQ=255) ctctGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACg > 7:97809/1‑149 (MQ=255) tCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGa < 2:116736/148‑1 (MQ=255) aaTGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACAtt > 6:239426/1‑149 (MQ=255) gTGCCGTGATCGTCATTCCGGCTGGGCAGAGCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCg > 3:281340/1‑149 (MQ=255) gTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAAc < 4:171593/149‑1 (MQ=255) gTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAAc > 2:193987/1‑149 (MQ=255) tCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCa < 5:180915/149‑1 (MQ=255) aTTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCgg < 6:197719/148‑1 (MQ=255) aTTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGt > 2:241486/1‑149 (MQ=255) ttCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCGAAATCTGGCCACCGtcgat > 1:278979/1‑91 (MQ=37) ttCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCGAAATCTGGCCACCGtcgat < 2:278979/95‑5 (MQ=37) ccGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTa < 2:176713/148‑1 (MQ=255) cGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTAc < 6:155304/148‑1 (MQ=255) cTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCAACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCaa < 5:239426/149‑1 (MQ=255) ggCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAg < 5:146400/147‑1 (MQ=255) ggCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGt < 3:357516/148‑1 (MQ=255) ggCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTg < 8:97809/149‑1 (MQ=255) gCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGa > 7:279708/1‑149 (MQ=255) gTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATAc > 2:195669/1‑148 (MQ=255) tGGTAGCGGCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACaa < 2:144513/149‑1 (MQ=255) aGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCg > 7:96400/1‑148 (MQ=255) aGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGa > 6:182350/1‑149 (MQ=255) cGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGaca < 4:231510/149‑1 (MQ=255) gTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGacac < 7:72101/149‑1 (MQ=255) gTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGacac > 4:114242/1‑149 (MQ=255) gTCAAAGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGacac > 6:114932/1‑149 (MQ=255) tCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGAc < 4:338626/133‑1 (MQ=255) tCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGAc > 3:338626/1‑133 (MQ=255) ggCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGa > 1:221451/1‑149 (MQ=255) cAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGAcc < 1:195669/149‑1 (MQ=255) aaaCGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCg > 1:55483/1‑149 (MQ=255) aaaCGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACACTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCg > 1:264568/1‑149 (MQ=255) cGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCt < 3:114242/149‑1 (MQ=255) gACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTc > 4:262121/1‑149 (MQ=255) cacacCTTACATCGACGGTGGCCAGATTTCTGCCACCGTGACAGGTAGTACCGGTGGTGGCTGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCTATACAATCGACACTACAACCGCGACCCTGACCGCCTCGc < 7:219735/149‑1 (MQ=255) cacacCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGAc > 6:12162/1‑108 (MQ=255) cacacCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGAc < 5:12162/108‑1 (MQ=255) acCTTACTTCGACGGTGTCCAGATTTCGGCCACCGTGACAGGTCGTACCGGTGGGGGCGGGCTGAGGTTGACATTTCCGCAAACGCCAGCGGTTAACCAACGGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCaa < 2:33066/149‑1 (MQ=255) acCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGAGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGcc > 3:43462/1‑147 (MQ=255) cTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGCCCGCCTCGCCAAGc > 4:30444/1‑149 (MQ=255) ttACATCGACCCTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGCTGGTTGCGGGCTCACGGTGACATTGCAGCAAACGACAGCGTTTACCCAAGTGACCTATACAATCGACACTACAACCGCGACCCTCAACGCCTCGCCAAGCg > 6:25168/1‑149 (MQ=255) cATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGa < 8:279708/149‑1 (MQ=255) aTCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGAc > 4:80981/1‑149 (MQ=255) ccAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCg > 2:227989/1‑149 (MQ=255) ccAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCg > 4:71606/1‑149 (MQ=255) cAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGc < 7:222564/147‑1 (MQ=255) cAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGc > 8:222564/1‑147 (MQ=255) cAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGt > 1:37225/1‑149 (MQ=255) cAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGt > 4:97581/1‑149 (MQ=255) aTTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGAt > 6:357720/1‑149 (MQ=255) tttCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGAt > 8:339703/1‑148 (MQ=255) tttCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGATc < 7:339703/149‑1 (MQ=255) ttCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGATCa > 3:284209/1‑149 (MQ=255) cGGCCTCCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGATCAc < 4:180406/148‑1 (MQ=255) cGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGATCAc < 8:96400/148‑1 (MQ=255) | CCACCGTTGGTCAGGCGCCGACCACCAACCTGGTAATTACTCTGTCCAATGGTGCCGTGATCGTCATTCCGGCTGGGCAGACCAGTGGTAGCGTCAACGTCGCAGTTCCGGCAAACGACACACCTTACATCGACGGTGGCCAGATTTCGGCCACCGTGACAGGTAGTACCGGTGGTGGCGGGCTGACGGTGACATTGCCGCAAACGCCAGCGGTTACCCAAGTGACCGATACAATCGACACTACAACCGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGTGGCGTGATCAC > NC_002947/195090‑195384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |