Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,878,605 T→A 7.4% Y243N (TAC→AAC)  PP_1684 → transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,878,6050TA 7.4% 158.1 / 3.0 54Y243N (TAC→AAC) PP_1684transporter
Reads supporting (aligned to +/- strand):  ref base T (28/22);  new base A (2/2);  total (30/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

GATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTACCTGCTGCG  >  NC_002947/1878458‑1878753
                                                                                                                                                    |                                                                                                                                                    
gATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTa                                                                                                                                                     >  7:339531/1‑149 (MQ=255)
  tCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTAcc                                                                                                                                                   >  3:257521/1‑149 (MQ=255)
     cccGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGTCAACCAgg                                                                                                                                                >  8:303552/1‑149 (MQ=255)
     cccGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTgg                                                                                                                                                <  8:124772/149‑1 (MQ=255)
     cccGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTgg                                                                                                                                                <  7:302232/149‑1 (MQ=255)
       cGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGtt                                                                                                                                              <  6:82152/149‑1 (MQ=255)
           aCCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGAc                                                                                                                                           <  2:147402/148‑1 (MQ=255)
           aCCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGAc                                                                                                                                           <  3:222592/148‑1 (MQ=255)
              cAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGTCAACCAGGTAGGCCAGc                                                                                                                                       <  8:200474/149‑1 (MQ=255)
                gTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGTCAACCAGGTAGGCCAGCag                                                                                                                                     <  7:303552/149‑2 (MQ=255)
                                   ccTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCCCCGGTa                                                                                                                  >  6:308879/1‑149 (MQ=255)
                                         ccAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGc                                                                                                                             <  8:306609/132‑1 (MQ=255)
                                         ccAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGc                                                                                                                             >  7:306609/1‑132 (MQ=255)
                                                     cgAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTgg                                                                                                >  6:146604/1‑149 (MQ=255)
                                                         gCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCgg                                                                                            <  4:293958/149‑1 (MQ=255)
                                                         gCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCg                                                                                             <  4:257521/148‑1 (MQ=255)
                                                           gTGCACGCACTCCGGCGTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACTACGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGc                                                                                           <  1:307004/149‑1 (MQ=255)
                                                                    cTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTAGGCCTGTTCAACa                                                                                 >  5:153725/1‑149 (MQ=255)
                                                                     tCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACAt                                                                                >  3:156321/1‑149 (MQ=255)
                                                                       cGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACAtcg                                                                              >  4:261360/1‑149 (MQ=255)
                                                                                       gCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCgc                                                              >  6:192867/1‑149 (MQ=255)
                                                                                        cACTGGGCTTTTTTGTCTTTTGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGACTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTTGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCgct                                                             <  5:365219/149‑1 (MQ=255)
                                                                                         aCTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCgctg                                                            <  3:261360/149‑1 (MQ=255)
                                                                                                ttttttGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGtt                                                     <  7:347418/149‑1 (MQ=255)
                                                                                                  ttttGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTgg                                                   >  6:233734/1‑149 (MQ=255)
                                                                                                  ttttGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTgg                                                   >  1:74325/1‑149 (MQ=255)
                                                                                                   tttGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGtt                                                                                                                                              >  8:339978/1‑57 (MQ=255)
                                                                                                   tttGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGtt                                                                                                                                              <  7:339978/57‑1 (MQ=255)
                                                                                                     tGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTgggc                                                 <  5:308879/148‑1 (MQ=255)
                                                                                                          gtgGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGggcgggcg                                            >  4:67108/1‑148 (MQ=255)
                                                                                                           tgGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGACGGTACCTTCACCGCTGGCTGGTTGCGCGGGCGCa                                          >  8:193225/1‑149 (MQ=255)
                                                                                                              cTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGt                                       >  7:21705/1‑149 (MQ=255)
                                                                                                                       cGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCcgc                              >  8:226977/1‑149 (MQ=255)
                                                                                                                        gTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTc                                                                                     >  4:218392/1‑93 (MQ=255)
                                                                                                                        gTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTc                                                                                     <  3:218392/93‑1 (MQ=255)
                                                                                                                        gTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCcgcg                             >  6:12832/1‑149 (MQ=255)
                                                                                                                         tATTGATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCgcgc                            <  4:12503/149‑1 (MQ=255)
                                                                                                                         tATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCgcgc                            <  5:233734/149‑1 (MQ=255)
                                                                                                                           ttCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCct                          >  7:277477/1‑149 (MQ=255)
                                                                                                                              aTTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACAtcg                                                                              >  7:82628/1‑94 (MQ=255)
                                                                                                                              aTTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACAtcg                                                                              <  8:82628/94‑1 (MQ=255)
                                                                                                                               ttGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAAc                                                                                  >  4:372682/1‑89 (MQ=255)
                                                                                                                                tGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGa                     >  6:118395/1‑149 (MQ=255)
                                                                                                                                 ggCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGa                     <  5:192867/148‑1 (MQ=255)
                                                                                                                                   cGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCg                  <  3:67108/149‑1 (MQ=255)
                                                                                                                                     ttCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCGGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCggg                >  5:226919/1‑149 (MQ=255)
                                                                                                                                        aCCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTg             >  6:77771/1‑149 (MQ=255)
                                                                                                                                           ctgctgGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTa           >  6:320759/1‑149 (MQ=255)
                                                                                                                                           atgctgGTCAACCAGGTAGGCCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTa           >  3:317676/2‑149 (MQ=255)
                                                                                                                                                 gCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTACctgct     >  5:78765/1‑149 (MQ=255)
                                                                                                                                                   cTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGtt              >  7:189236/1‑138 (MQ=255)
                                                                                                                                                   cTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGtt              <  8:189236/138‑1 (MQ=255)
                                                                                                                                                   cTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGt            <  4:71092/140‑1 (MQ=255)
                                                                                                                                                   cTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGt            >  3:71092/1‑140 (MQ=255)
                                                                                                                                                    tACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTACCTGCtgcg  >  4:76789/1‑149 (MQ=255)
                                                                                                                                                    tACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTACCTGCtgcg  >  3:366895/1‑149 (MQ=255)
                                                                                                                                                    tACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTACCTGCtgcg  >  1:238220/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GATCGCCCGTTACCCAGTCACGGTGCCGAGCAGACCCTGGGCCAGGCGCTGCGCGAGGCGTGCACGCACTCCGGCTTCTGGTTGCTGGCACTGGGCTTTTTTGTCTGTGGCTTCCAGGTCGTATTCATTGGCGTTCACCTGCTGGCCTACCTGGTTGACCAGCATCTGGCTGCGGCCACCGGTACGACAGTGCTGGCGCTGGTCGGCCTGTTCAACATCGTCGGTACCTTCACCGCTGGCTGGTTGGGCGGGCGCATGTCCAAGCCGCGCCTGCTGACCGGGTTGTACCTGCTGCG  >  NC_002947/1878458‑1878753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: