| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,551 | C→G | 12.2% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,551 | 0 | C | G | 12.2% | 341.0 / 32.3 | 139 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (58/62); new base G (11/6); total (70/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 | |||||||||||
Only 100 of 139 total aligned reads displayed.
CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACG > NC_002947/197406‑197695 | cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTa > 8:63262/1‑149 (MQ=37) cGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAcc < 5:134310/149‑1 (MQ=37) cGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAcc > 2:96341/1‑149 (MQ=37) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCg < 2:347431/149‑1 (MQ=37) tCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 7:348563/1‑149 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCCCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTg > 7:247856/1‑147 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 5:170950/149‑1 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 3:158413/149‑1 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 1:37076/149‑1 (MQ=37) aCTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 6:304407/1‑149 (MQ=37) cTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg > 3:206728/1‑149 (MQ=37) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa > 5:163754/1‑149 (MQ=37) aTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACTATTACCGTTGAAGCCGGCAAGAcc > 1:48365/1‑149 (MQ=37) aTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAcc > 1:199705/1‑149 (MQ=37) aTGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAc < 8:64182/148‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg < 2:211510/149‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg > 7:266827/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 2:379179/149‑1 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 8:12525/149‑1 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACCCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 7:199389/1‑149 (MQ=37) ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGc < 1:96341/149‑1 (MQ=37) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 2:222578/1‑147 (MQ=37) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 7:356737/1‑123 (MQ=38) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 8:356737/123‑1 (MQ=38) gACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCg < 8:266827/149‑1 (MQ=37) cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAGATCACCTACACCGTGATCATCAGCAATCCTGCCCAGACGCCGGTACCCGTGACCCTGTCCAACGGCCAACCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGa > 1:66181/1‑149 (MQ=11) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGAtt < 1:36764/149‑1 (MQ=37) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTCCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 3:241747/1‑138 (MQ=37) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTACCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 4:241747/138‑1 (MQ=37) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCAtt > 1:277029/1‑110 (MQ=40) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCAtt < 2:277029/110‑1 (MQ=40) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa < 2:187929/127‑1 (MQ=38) tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaa > 1:187929/1‑127 (MQ=38) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTcc < 7:63262/148‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 4:359299/149‑1 (MQ=37) cGAGCCCGTCGGTCACCGAAGGCGGCGT‑GAACACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑Acc < 7:15927/149‑1 (MQ=37) gCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCg > 5:89064/1‑149 (MQ=37) cGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTAcc < 5:139534/101‑1 (MQ=40) gTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGa < 1:136213/149‑1 (MQ=37) ggTCACCGAAGGCGGCGT‑TATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAt < 2:236544/148‑1 (MQ=17) ccGTAGGCGGCGT‑CATCACCTACACCGTGATCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTc < 3:198314/149‑1 (MQ=255) cGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTc > 3:372022/1‑148 (MQ=37) aaGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGTCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTac < 5:290544/149‑1 (MQ=37) aGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTaca < 6:142179/149‑1 (MQ=37) gcggcgT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTacaa > 6:64887/1‑148 (MQ=37) cgT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCAGGCGAATGACGTCTACAACAACg > 4:102162/1‑149 (MQ=37) tCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:180266/1‑148 (MQ=37) tCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTc < 6:163754/148‑1 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGAc > 3:222899/1‑149 (MQ=37) tACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑AGCCCGGCGAATGACGTATACAACAACGGGTCgcccgt > 8:276562/1‑144 (MQ=255) tACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGACAAACCATTACCGTTGAAGCCGGCAAGACACAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACCCTTCGAATGt > 6:45344/1‑149 (MQ=11) cacCTTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 5:384339/149‑1 (MQ=255) cacCGTGATCCTGATCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATg < 6:55910/122‑1 (MQ=38) cacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATg > 5:55910/1‑122 (MQ=38) gATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCa < 8:348563/149‑1 (MQ=21) tCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAc > 5:2333/1‑148 (MQ=38) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCAt > 6:340956/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 8:222945/1‑149 (MQ=17) aGCAATCCTGCCCAGACGCCTGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc < 4:206728/147‑1 (MQ=17) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc < 1:104783/147‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCga < 4:372022/149‑1 (MQ=37) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc < 3:16244/147‑1 (MQ=17) gCATTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAATCCATTACGGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGATTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCga < 5:111826/148‑1 (MQ=11) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCgag < 6:334882/149‑1 (MQ=17) aaTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGAAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGaa > 7:71319/1‑149 (MQ=37) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAc < 7:7265/149‑1 (MQ=37) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc > 7:194593/1‑64 (MQ=40) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc < 8:194593/64‑1 (MQ=40) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACg > 3:146841/1‑149 (MQ=17) tCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACg > 7:223494/1‑149 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcaca < 5:340956/149‑1 (MQ=17) ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAAACCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAAAGGTTCGACTGTCAGCGTCACCATCGAGAACGCAACAg > 1:270055/1‑149 (MQ=11) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg > 3:48931/1‑149 (MQ=255) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCAAAACCGTTGAAGCCGGCAAGACCCCGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACCTATACAACAACGGTTCGACTGTCAGCGTCCACATAGAGAACGCCACAgg > 5:36701/1‑149 (MQ=11) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc < 1:222578/149‑1 (MQ=37) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc > 2:33438/1‑149 (MQ=37) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 6:89064/149‑1 (MQ=37) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGGCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 7:92194/149‑1 (MQ=17) aCGCCGGTGACCGTGATCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 1:219756/149‑1 (MQ=11) ccGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa < 2:199705/149‑1 (MQ=17) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 4:222899/149‑1 (MQ=35) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:133918/149‑1 (MQ=14) aCCGTGACCCTGTCCAAGGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 6:80993/149‑1 (MQ=255) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 8:247856/149‑1 (MQ=34) cGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg > 8:22233/1‑148 (MQ=32) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc > 7:30206/1‑148 (MQ=32) aCCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 8:124572/148‑1 (MQ=12) aCCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 7:212789/1‑149 (MQ=12) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGTACCCCGGCAAATGACGTGTACAACAACGGTACCACTGTCAGCGTCACCAGCGAGAACGCCACAGCGGGTAATTTCGACCAACt > 1:302329/1‑149 (MQ=11) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCAACATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 1:13684/1‑149 (MQ=255) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 5:258077/1‑149 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 4:176120/1‑148 (MQ=32) aaCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 3:226561/132‑1 (MQ=12) aaCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 4:226561/1‑132 (MQ=12) aCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc < 8:212789/149‑1 (MQ=12) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAAAGCCACAGGCGGTAATTTCGATCAACTGACCCCGAAccc < 6:185770/149‑1 (MQ=21) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTAACCATCGAGCAAGCCACAGGCGGTAATTTCGAGCAACTGAccccgaccccga > 6:117285/1‑149 (MQ=255) cAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAATGACGTCTACAACCACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc > 7:315101/1‑149 (MQ=255) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 7:156246/87‑1 (MQ=31) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGCCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 8:156246/1‑87 (MQ=14) | CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGT‑GATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACG > NC_002947/197406‑197695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |