Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,068,151 | A→T | 16.6% | intergenic (‑96/+25) | plsC ← / ← PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,068,151 | 0 | A | T | 16.6% | 122.3 / 15.8 | 54 | intergenic (‑96/+25) | plsC/PP_1845 | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein |
Reads supporting (aligned to +/- strand): ref base A (26/19); new base T (3/6); total (29/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.75e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
AACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCG > NC_002947/2068005‑2068294 | aaCGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAg > 6:302660/1‑149 (MQ=255) aaGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGATGGGTCAAAACTTGGTGCAGGCCTGTTACGGCCC‑TTTCTCGGGCAAGCAcgc > 7:176413/1‑148 (MQ=255) aGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTCCACTGGCTGGGGCAAACCTAGGTGAAGGCCTATTACGGACA‑TTTCGCGGGCAACCCagcg > 8:54867/1‑148 (MQ=255) aaTGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTTTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCTTGCCCGCGaaagg < 2:245328/149‑3 (MQ=255) aaTGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTTCGCGGGCTTGCCCGCGaaag < 4:318619/149‑2 (MQ=255) cAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTTCGCGGGCTTGCCCGCGAAAgggc < 8:51130/148‑2 (MQ=255) cAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTTCGCGGGCTTGCCCGCGAAAgggc < 8:156494/148‑2 (MQ=255) cagcagGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCCTTTTCGCGGGCTTGCCCGCG‑AAAGGGccgtaaca < 8:135953/149‑7 (MQ=38) ggAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAg > 7:309718/1‑149 (MQ=255) gAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGAGGGCAAGCCCGCGAAAACGGCCCGTGCGGC‑TAGc > 2:103262/1‑149 (MQ=255) aCGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAatat > 4:46146/1‑149 (MQ=255) aCGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAatat > 4:27619/1‑149 (MQ=255) aaTGAATAATGCATGGTAGTCCTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTGGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATAtgctg < 2:126161/149‑1 (MQ=255) aaTGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCcgc > 5:78709/1‑117 (MQ=255) aaTGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCcgc < 6:78709/117‑1 (MQ=255) aaTGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATAtgctg < 5:302660/149‑1 (MQ=255) aTGAAAAAAGCATGGTACGACTCAAACAAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTCGCTGGGGCAAACCTTGGTGAAGGCCTGTTACGGCCC‑TTTCGCGGGAAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATAtgctgc > 4:320707/1‑149 (MQ=255) aTAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGAt < 5:193275/149‑1 (MQ=255) cATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCt > 3:345663/1‑149 (MQ=255) ggaCGACTCACACCAGACGGTCGCGGGTCAGTGTACGGGTGTGCACTGGCTTGGGCAAACCTTGGTGCAGGCCTTTTACGGCCA‑TTTCGCGGGCAAGCCCGCTAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGAt < 8:176413/147‑1 (MQ=255) cTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGAGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCtt > 7:150842/1‑149 (MQ=255) acCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGaa > 4:120496/1‑94 (MQ=255) acCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGaa < 3:120496/94‑1 (MQ=255) gTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTc > 5:339843/1‑148 (MQ=255) attttACGGGTGTGGAATTGCTGGGGCAAACCTTGGTGGATTCCTGTTACGGCCC‑TTTCGGCGGCAATGCCGCGAAAATGGCCCGTGCGGCTTTGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCt < 1:103262/145‑1 (MQ=255) tACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTgc < 4:345663/148‑1 (MQ=255) tACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGACCTTTgag > 4:100069/1‑147 (MQ=255) gtgCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTc < 3:27619/149‑1 (MQ=255) gctggGGCAAACCTTGGAGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTg < 8:150842/147‑1 (MQ=255) ctggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGgtg < 3:46146/149‑1 (MQ=255) tggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTg < 4:51553/145‑1 (MQ=255) tggGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTg > 3:51553/1‑145 (MQ=255) gggCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGtt < 8:239243/148‑1 (MQ=255) gCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCtt > 5:296867/1‑149 (MQ=255) aCCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGcc > 7:352480/1‑95 (MQ=255) aCCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGcc < 8:352480/95‑1 (MQ=255) cTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTgcgc > 6:148059/1‑149 (MQ=255) ggTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCa < 8:309718/148‑1 (MQ=255) gTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAg > 3:278546/1‑148 (MQ=255) tGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCa > 2:44340/1‑149 (MQ=255) cAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCAt < 5:148059/148‑1 (MQ=255) cAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATg > 6:53752/1‑149 (MQ=255) aGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGt > 6:234841/1‑149 (MQ=255) aGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGt > 8:348829/1‑149 (MQ=255) gggCCCTTTTCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGcttctt > 3:75119/2‑149 (MQ=255) cGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGcttctt < 2:131755/149‑1 (MQ=255) gcccttttCGCGGGCTTGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGcttctt > 8:336221/6‑148 (MQ=255) gCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCa < 1:40524/149‑1 (MQ=255) cccttttCGCGGGCTTGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCa < 7:336221/145‑1 (MQ=255) ccttttCGCGGGCTTGCCCGCG‑AAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGc > 1:151771/4‑149 (MQ=255) tttCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTc > 6:294160/1‑149 (MQ=255) cgGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCcgcg > 5:328203/1‑149 (MQ=255) cAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGtt < 1:57923/107‑1 (MQ=255) cAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGtt > 2:57923/1‑107 (MQ=255) | AACGGCAAGAAAATGCAGCCCCAGCAGGAACATACGCAATGAATAAAGCATGGTACGACTCACACCAGACGGTCGCGGGGCAGTGTACGGGTGTGCACTGGCTGGGGCAAACCTTGGTGCAGGCCTGTTACGGCCC‑TTTCGCGGGCAAGCCCGCGAAAAGGGCCCGTGCGGC‑TAGCCAATATGCTGCTGATCCAGCTCGATCGCCTTGTCCAGCGCCTCCAGCAGCCCTTTGCGCACTTTCAGCTTGGTGTTCTTGTGCGCCAGCATGTTCAGCTTCTTCAGCTCCCGCG > NC_002947/2068005‑2068294 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |