Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,237,679 | G→C | 16.4% | A302G (GCG→GGG) ‡ | PP_1975 ← | EmrB/QacA family drug resistance transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,237,679 | 0 | G | C | 16.4% | 131.6 / 18.4 | 55 | A302G (GCG→GGG) ‡ | PP_1975 | EmrB/QacA family drug resistance transporter |
Reads supporting (aligned to +/- strand): ref base G (24/22); new base C (4/5); total (28/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.29e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.07e-01 |
AGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATGACGAAG > NC_002947/2237538‑2237825 | aGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑GCGCAGGTa > 5:362115/1‑149 (MQ=255) aGGCAAAACCCCAGCGCCCATAGTACCATGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTa < 6:350247/149‑1 (MQ=255) gCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTa > 8:286222/1‑147 (MQ=255) gCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTT‑TAAACCATTACCTGCCGCCAgtaacg > 7:101532/1‑144 (MQ=255) cAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑GCGCAGGTACAg < 5:154116/149‑1 (MQ=255) cAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑GCGCAGGTACAg < 7:75107/149‑1 (MQ=255) cAAAACCCCAGCCCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAg < 6:88256/149‑1 (MQ=255) aaaaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGc > 4:95162/1‑149 (MQ=255) aaaaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGc > 4:287667/1‑149 (MQ=255) aaaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑GCGCAGGTACAggg < 6:362115/149‑3 (MQ=255) aaaCCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCg < 5:331904/149‑1 (MQ=255) ccccAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTa < 4:62478/149‑1 (MQ=255) ccccAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTa < 3:95162/149‑1 (MQ=255) gTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑GCGCAGGTACAgg < 2:166955/131‑2 (MQ=255) gTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑GCGCAGGTACAgg > 1:166955/1‑130 (MQ=255) ccTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGcc < 7:286222/148‑1 (MQ=255) ccTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGTTAGATCGAGCCGTACAGGCCCACAcc > 3:185235/1‑148 (MQ=255) cTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCa > 3:321731/1‑149 (MQ=255) aGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCa < 1:6374/148‑1 (MQ=255) gCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCg < 5:207149/149‑1 (MQ=255) aCCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGAt > 3:71125/1‑149 (MQ=255) gCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTc < 4:321731/149‑1 (MQ=255) gATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACa < 3:287667/149‑1 (MQ=255) agcAGGAACAGCCGCGGAATACCCATCCACATGACCACCTCCCCAATCTGCAAGGCGTTGGAACCCTGAACCTG‑CGCCAGGTACAGCGGGAGCAGATAGATCGCCCCGTACAGGCCCACACCCCTGCCCAGGCGGGCGATGCTCGACAg < 3:217000/147‑1 (MQ=255) gCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCgg > 6:219878/1‑149 (MQ=255) cGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCg < 4:71125/147‑1 (MQ=255) cccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGc > 4:53456/1‑139 (MQ=255) cccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGc < 3:53456/139‑1 (MQ=255) cccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAg < 3:78941/149‑1 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCATATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGACTGGCGATTCTCGACAGGCCAAAGTTGCGGTTGc < 7:234891/144‑1 (MQ=255) ccATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGACTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGc > 8:234891/1‑144 (MQ=255) aTGATCACCTCGCCAATCTGGAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACCCCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTAGCGGTTGCCGAGGCTACGCAg > 5:42327/1‑149 (MQ=255) aTCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGTTAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGtt < 4:185235/149‑1 (MQ=255) aTCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGtt < 2:40825/149‑1 (MQ=255) aCCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGAt > 7:8074/1‑149 (MQ=255) ccTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATc < 1:3746/149‑1 (MQ=255) tCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAg > 7:234652/1‑149 (MQ=255) cAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTg < 5:199699/116‑1 (MQ=255) cAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTg > 6:199699/1‑116 (MQ=255) aGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTg < 5:162608/149‑1 (MQ=255) aGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTg < 5:219878/149‑1 (MQ=255) aGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTg > 6:162608/1‑149 (MQ=255) aGGCGTTGTAACCCTGTACCTG‑CGCCA‑GTACAGCGGTAGCAGATATATAGAGCCGTACAGGCCCACACCCATGCCCCGGCTTGCGATTCACGACATGCCAAATTTGCGGTTGCCGAGGATACCGATGTTTATAAGCGGGGGCGGCTTgg > 4:62987/1‑149 (MQ=255) aGGCGTTGTAACCCTGTACCTG‑CGCCA‑GTACAGCGGTAGCAGATAGATAGAGCCGTACAGGCCCACACCCATGCCCATGCTGGCGATGCTAGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCATGTTGAAAAGCGGGTGAGGCTTg > 4:68024/1‑148 (MQ=255) gCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTgg > 1:68663/1‑148 (MQ=255) gTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCgg > 4:332406/1‑135 (MQ=255) gTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCgg < 3:332406/135‑1 (MQ=255) gTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGaa > 4:212292/1‑148 (MQ=255) tAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTg > 1:198809/1‑149 (MQ=255) ccTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAg > 5:208022/1‑148 (MQ=255) cTGTACCTG‑GCGCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCt > 2:350582/1‑134 (MQ=255) cTGTACCTG‑GCGCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCt < 1:350582/134‑1 (MQ=255) cTGTACCTG‑GCGCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGa > 6:252084/1‑149 (MQ=255) tGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGTGCCGTACACGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGATGCTTGGAAAACTGCAGGAt > 1:258354/1‑149 (MQ=255) aCCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATGAc > 4:177269/1‑149 (MQ=255) cgcCA‑GTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATGACGAAg < 3:62987/147‑1 (MQ=255) | AGGCAAAACCCCAGCGCGCATAGTACCTTGGGCGATATCACCTTCATCAGTTGCGGCACCAGCGGGATCAGGAACAGCTGCGGAATACCCATCCACATGATCACCTCGCCAATCTGCAAGGCGTTGTAACCCTGTACCTG‑CGCCAGGTACAGCGGTAGCAGATAGATCGAGCCGTACAGGCCCACACCCATGCCCAGGCTGGCGATGCTCGACAGGCCAAAGTTGCGGTTGCCGAGGATACGCAGGTTGATCAGCGGGTGAGGCTTGGAAAACTGCAGGATGACGAAG > NC_002947/2237538‑2237825 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |