Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,455,012 | C→G | 9.8% | S36T (AGC→ACC) ‡ | mfd ← | transcription‑repair coupling factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,455,012 | 0 | C | G | 9.8% | 147.4 / 6.6 | 51 | S36T (AGC→ACC) ‡ | mfd | transcription‑repair coupling factor |
Reads supporting (aligned to +/- strand): ref base C (20/26); new base G (3/2); total (23/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.47e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.05e-01 |
GTGCGGCGAGAACAGGTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCAAAGAGACCGAT > NC_002947/2454867‑2455157 | gTGCGGCGAGATCAGGGCGTTTGGCAGGGTTTCCCAATCGGGGAACGGCAGCACTGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCgctg < 3:108222/148‑1 (MQ=255) cgATAACATGTCGTAGGGCAGGGTTTCCCATTCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCAGCGCTggccg < 6:51682/149‑3 (MQ=255) gagaACAGGTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCgctg < 8:339047/141‑1 (MQ=255) gagaACAGGTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCgctg > 7:339047/1‑141 (MQ=255) gagaACAGGTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTggcggc < 8:44915/149‑1 (MQ=255) aaCAGGTCGTACGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTc < 8:92377/149‑1 (MQ=255) cAGGTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCgg < 3:15618/149‑1 (MQ=255) gTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGa < 3:98986/149‑1 (MQ=255) gTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGa > 4:98986/1‑149 (MQ=255) gTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGa > 5:121096/1‑149 (MQ=255) tCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGAt < 7:64983/149‑1 (MQ=255) ggCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAg > 1:90169/1‑149 (MQ=255) ggCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAg > 3:135747/1‑149 (MQ=255) gCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAgg > 2:378536/1‑149 (MQ=255) gTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAg < 6:222383/149‑1 (MQ=255) tttCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAgg < 3:131799/149‑1 (MQ=255) tCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAggg < 6:40223/148‑1 (MQ=255) ccAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGggcgg > 2:53369/1‑149 (MQ=255) ccAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGggcag < 2:119459/149‑3 (MQ=255) aaTCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCa > 1:144229/1‑149 (MQ=255) ggAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGc < 7:255632/149‑1 (MQ=255) gggCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAgg > 4:356384/1‑149 (MQ=255) gggCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGCGAAGCCGCCAGCAGCGCTGGCCGCTTcac > 1:106498/1‑105 (MQ=38) gggCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGCGAAGCCGCCAGCAGCGCTGGCCGCTTcac < 2:106498/107‑3 (MQ=38) ggCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGgt < 3:47188/149‑1 (MQ=255) aGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGgtttg < 5:161281/149‑1 (MQ=255) tCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGgtttgttt > 3:126248/1‑149 (MQ=255) gggCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGtttgtttg < 1:378536/146‑1 (MQ=255) gggCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGtttgtttg < 4:135747/146‑1 (MQ=255) gggCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTgccg > 5:306943/1‑149 (MQ=255) aaaGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTgccggccg > 6:236451/1‑149 (MQ=255) gaagCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTgg < 2:90169/149‑1 (MQ=255) aagCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTgccg < 1:168108/141‑1 (MQ=255) aagCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTgccg > 2:168108/1‑141 (MQ=255) gcgcAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCAGGCCGTGGcc > 4:242294/1‑148 (MQ=255) gcgcAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGAAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTAGGCGATGGCAAGGCTGAGGGCGGCACCGGTCAGTTTGCCCAAGGTTGGTTTGCAGGCCGTgtcg > 4:247095/1‑145 (MQ=255) cgcAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGa < 6:247563/149‑1 (MQ=255) aGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATCGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTAGTTTGCCGGCCGTGTCCGACAt > 6:261254/1‑149 (MQ=255) cTGCTCCAGACGGTCGGCGGCCGGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCGGCTGGCGGCTTCGGCGATGGCAAGGCGGAGGGCGGCACCGGGCAGGTTGCCCCAGGGTTGTGTGCCGGCCGTGGCCGACATTTGCg < 8:274711/149‑1 (MQ=255) gcggcggCCTGGCTGGCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCTGCGATGGCAAGGCTGAGGGCTGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAAc < 5:261254/148‑1 (MQ=255) cTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACgg < 6:306943/149‑1 (MQ=255) ggCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGga < 3:335590/149‑1 (MQ=255) gCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACgg > 3:28049/1‑146 (MQ=255) gCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACgg > 3:23055/1‑146 (MQ=255) cTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGgaga < 2:144229/149‑1 (MQ=255) cGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACggg > 4:297228/1‑138 (MQ=255) cGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACggg < 3:297228/138‑1 (MQ=255) cGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTc > 7:4362/1‑149 (MQ=255) ccgAAGCCGCCAGCAGCGCTGGCCGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCgg > 5:116077/3‑148 (MQ=255) ccgAAGCCGCCAGCAGCGCTGGCCGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGATTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCgg > 8:120641/3‑148 (MQ=255) aaGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCaaa < 1:53369/149‑1 (MQ=255) aaGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCaaa < 6:121096/149‑1 (MQ=255) gCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCAAaga < 1:374377/149‑1 (MQ=255) gCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCAAAGAGAc > 3:281747/1‑149 (MQ=255) gcgcTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCAAAGAGACCGAt < 4:126248/149‑1 (MQ=255) | GTGCGGCGAGAACAGGTCGTAGGGCAGGGTTTCCCAATCGGGGAACGGCAGCACGGGCAGGTCTGGGGCAAAGAAGCGCAGCTCCTGCTCCAGACGGTCGGCGGCCTGGCTGTCGGCCGTCAGCAGCAGGGTGAAGCGGCCAGCGCTGCTGGCGGCTTCGGCGATGGCAAGGCTGAGGGCGGCACCGGGCAGGTTGCCCCAGGTTTGTTTGCCGGCCGTGGCCGACATTTGCGGTAGGCGCAGAACTGACACGGGAGATTGCACTCCAAGCGTTGCGGCAAAGAGACCGAT > NC_002947/2454867‑2455157 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |