Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,489,609 | C→G | 9.7% | G202G (GGC→GGG) | PP_2184 → | formate dehydrogenase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,489,609 | 0 | C | G | 9.7% | 119.3 / 4.1 | 41 | G202G (GGC→GGG) | PP_2184 | formate dehydrogenase subunit beta |
Reads supporting (aligned to +/- strand): ref base C (18/19); new base G (2/2); total (20/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.81e-01 |
CCTGCGTGGCCGTGGTGGTGCGGCGTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTGGCTACCTGG > NC_002947/2489465‑2489757 | ccTGCGTGGCCGTGGTGGTGCGGCGTTCCCGGCCGGCATCAAGTGGCGGACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGAcc < 7:303256/149‑1 (MQ=255) tGGCCGGGGTGGTGCGGCGTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTcc < 4:219430/149‑1 (MQ=255) ggCCGGGGTGGTGCGGCGTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGGGTCGCCTTcca < 1:58858/149‑2 (MQ=255) gCCGTGGTGGTGCGGCGTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGGGTCGCCTTccat < 3:161673/149‑3 (MQ=255) cgTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATg < 6:331406/149‑1 (MQ=255) gTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGa > 7:154690/1‑149 (MQ=255) ttCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGAACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGa > 3:123984/1‑148 (MQ=255) ccggcATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGcc < 4:343757/149‑1 (MQ=255) tCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCTGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTc < 1:313016/149‑1 (MQ=255) tCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTc > 3:135050/1‑149 (MQ=255) aaGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGc < 4:328198/149‑1 (MQ=255) aGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCgg > 2:31626/1‑142 (MQ=255) aGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTACCTGCTGATCGAGGGCATGATCATTGCCgg < 1:31626/142‑1 (MQ=255) gTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGt > 2:61173/1‑149 (MQ=255) tgATCCTGGCGCCGGGCAGACGGCCGTGGTGGCCAACGCCTACGAGGGGTACACCGGCACGCTCGCTGATCGCAGTCGTATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAgg < 4:242928/149‑1 (MQ=255) cTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTTATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTTGGTGCCGACAAGGGCtat < 8:154690/149‑1 (MQ=255) gcgcCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATc > 4:105365/1‑149 (MQ=255) ccGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTAt < 5:211651/149‑1 (MQ=255) aGTACGTGGTGTGCAACTCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTc < 7:306575/148‑1 (MQ=255) tACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGa < 4:288476/149‑1 (MQ=255) ggtgTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTAt < 4:123984/148‑1 (MQ=255) ggtgTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATc > 7:131828/1‑149 (MQ=255) cAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGAt < 1:61173/148‑1 (MQ=255) cAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATg > 7:176806/1‑149 (MQ=255) gaGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCggg > 8:191178/1‑148 (MQ=255) gggTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTAc > 3:302347/1‑149 (MQ=255) tCGGGCACGGTCGCTTATCCCATGCTTATGGAAGCCGACCCCTTCCTGCTGATCCCGGGCATGATCATGGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTAtgt < 2:80813/110‑1 (MQ=255) gggCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAgg < 4:302347/149‑1 (MQ=255) gggCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCAGCTGATCGAGGGAATGATCATTGCCGGCATCGCCGTGGGTCCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCacg > 5:315563/1‑147 (MQ=255) cGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTc < 8:176806/149‑1 (MQ=255) gTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCg > 7:264198/1‑149 (MQ=255) tGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCg > 3:309530/1‑149 (MQ=255) gATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCg > 4:31004/1‑148 (MQ=255) cATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTCCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGt > 6:250359/1‑148 (MQ=255) tGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCt > 2:230835/1‑149 (MQ=255) agcaggAAGGGGTCGCCTTCCTGCTGATTGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCt > 3:70943/5‑149 (MQ=255) tGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTgg < 3:31004/148‑1 (MQ=255) aggAAGGGGTCGCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTGGc > 1:208451/2‑149 (MQ=255) gAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTGGCTa > 8:288461/1‑149 (MQ=255) ggCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCtt < 5:70457/122‑1 (MQ=255) ggCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCtt > 6:70457/1‑122 (MQ=255) cGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTGGCTACCTgg < 7:191178/149‑1 (MQ=255) cGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTGGCTACCTgg > 8:102535/1‑149 (MQ=255) | CCTGCGTGGCCGTGGTGGTGCGGCGTTCCCGGCCGGCATCAAGTGGCGTACCGTGCGTGATGCTGGCGCCGGGCAGAAGTACGTGGTGTGCAACGCCGACGAGGGTGACTCGGGCACGTTCGCTGATCGCATGCTGATGGAAGGCGACCCCTTCCTGCTGATCGAGGGCATGATCATTGCCGGCCTCGCCGTGGGTGCCGACAAGGGCTATATCTATGTGCGCTCGGAGTATCCCGATGCCATCCGGGTACTCGACCAGGCCTTCGCCATCGCACGTGACGCTGGCTACCTGG > NC_002947/2489465‑2489757 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |