Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,749,282 C→T 8.8% H98Y (CAC→TAC) ‡ PP_2405 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,749,2820CT 8.8% 154.9 / 3.0 57H98Y (CAC→TAC) ‡PP_2405hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (25/26);  new base T (3/2);  total (28/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.65e-01

CCCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTT  >  NC_002947/2749138‑2749428
                                                                                                                                                 |                                                                                                                                                    
ccccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCacac                                                                                                                                                  >  2:23643/1‑149 (MQ=255)
      gATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGTGCACCCCtac                                                                                                                                            <  6:321401/149‑3 (MQ=255)
      gATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCt                                                                                                                                              <  6:381530/147‑1 (MQ=255)
           cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGTGCACCCCtaccacca                                                                                                                                       <  1:25813/149‑8 (MQ=255)
            ccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                      <  1:192379/149‑1 (MQ=255)
            ccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                      <  6:265363/149‑1 (MQ=255)
                ttgtCAATGGCAAGGTGGTGCTGGTGGACTTGTGGACTTTGGACTGCATCATCTGCCTGCGCATCCTGCCGCATGTGAATGATTGGGCGCGGCTCTATGCCGATCAAGGGCTGGTGGTTGTAGGGGTGCACACCCCTGAGTTCGACTAc                                                                                                                                  <  2:290595/146‑1 (MQ=255)
                  cTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTAc                                                                                                                                  >  3:157319/1‑147 (MQ=255)
                  cTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGa                                                                                                                                <  1:21138/149‑1 (MQ=255)
                   tCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                            >  1:250117/1‑136 (MQ=255)
                   tCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                            <  2:250117/136‑1 (MQ=255)
                    cAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAg                                                                                                                               >  7:181126/1‑148 (MQ=255)
                     aaGGGCAAGGTGGTGCTGGTGGACTTCTGGAGCCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAg                                                                                                                               >  1:39743/1‑148 (MQ=255)
                     aaGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGCGACTGCATCAACTGCAGGCGCAGCCTGCCGCATGTGAATGAATTGCCGCGGCGATATGCCGATCACAGGCTGGTGGTCGTAGGGGTGCACACCCATGAGATCGACTAc                                                                                                                                  >  1:290595/1‑144 (MQ=255)
                          cAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCatgatg                                                                                                                        >  2:231880/1‑149 (MQ=255)
                           aaGGTGGTGCTGGTGGACTTCTGGACCTAGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGAtgt                                                                                                                       >  1:21913/1‑149 (MQ=255)
                               tggtgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCg                                                                                                                   <  5:71588/149‑1 (MQ=255)
                                 gtgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGAc                                                                                                                <  4:157319/149‑1 (MQ=255)
                                    cTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACttt                                                                                                             <  5:357507/149‑1 (MQ=255)
                                     tggtggACTTCTGGACCTGGGACTGCATCATCTGCCGGCGCAGCCTTCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCATGAGTTCGACTACGAGCATGATGTGGCGACTTTg                                                                                                            >  1:35332/1‑149 (MQ=255)
                                       gtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGc                                                                                                           <  1:37986/148‑1 (MQ=255)
                                       gtggACTTCTGGACCTGGCACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCg                                                                                                          <  8:282989/149‑1 (MQ=255)
                                         ggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                         >  1:264572/1‑148 (MQ=255)
                                             ttCTGGACCTGGGACTGCATCAACTGCCGGCGCAGACTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTCGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGAGGGAc                                                                                                      >  5:66284/1‑147 (MQ=255)
                                               cTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAgg                                                                                                  >  3:225155/1‑149 (MQ=255)
                                               cTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAg                                                                                                   <  8:181126/148‑1 (MQ=255)
                                                      cTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTAGGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGccc                                                                                            >  6:234382/1‑149 (MQ=255)
                                                        gggACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCgg                                                                                          >  4:293552/1‑149 (MQ=255)
                                                               cATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCatgatg                                                                                                                        <  3:42020/113‑1 (MQ=255)
                                                               cATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCatgatg                                                                                                                        >  4:42020/1‑113 (MQ=255)
                                                               cATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggta                                                                                   >  7:321020/1‑149 (MQ=255)
                                                                  gaaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAGCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcg                                                                                >  7:243325/2‑149 (MQ=255)
                                                                   aaCTGCCGGCGCAGCCTGCCGCATGTTAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTTCACACCCCTGAGTTCGACTACGAGCATGATGTGGCTACTTTGCGGGACAAGTTAGCCCGGTTgtgtatcgg                                                                               <  2:35332/149‑1 (MQ=255)
                                                                   aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGCGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgg                                                                               >  7:264152/1‑149 (MQ=255)
                                                                   aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACCTTTGCGGGACAAGGTAGCCCGGTTgggtatc                                                                                 <  1:231880/148‑1 (MQ=255)
                                                                   aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgg                                                                               <  7:36631/149‑1 (MQ=255)
                                                                   aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcg                                                                                <  8:67354/148‑1 (MQ=255)
                                                                    aCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcggg                                                                             >  3:51959/1‑149 (MQ=255)
                                                                         cGGCGCAGCCTGCCGCATGAGAATGATTGGGCGCGGCCCTATGCCGATCAAGGGCAGGGGGTGGAAGGGGTGCACACCCCAGAGTTCGACGACGAGCATCATGTGGCGCATATGCGGGACAAGCTAGCCCGGATGggtatccggtatcc                                                                        >  4:237807/1‑149 (MQ=255)
                                                                           gcgcAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCgg                                                                      >  7:80776/1‑149 (MQ=255)
                                                                              cAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGGAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTAGCGGGTATCCGGTgg                                                                   <  6:363328/149‑1 (MQ=255)
                                                                                    gCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCgg                                                                >  7:348249/1‑146 (MQ=255)
                                                                                         aTGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAAt                                                        <  7:118834/149‑1 (MQ=255)
                                                                                         aTGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGGGGTGGTAGGGGGGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAAt                                                        <  6:360483/149‑1 (MQ=255)
                                                                                                tGATTGGGCGCGGCGCTATGCCGATCAAGGGCTTGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGTGTATCCGGTGGCGGTAGATAATGACTAc                                                  <  1:23643/149‑1 (MQ=255)
                                                                                                             cgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGc                                    >  2:321489/1‑149 (MQ=255)
                                                                                                                  tGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTggg                               <  3:293552/149‑1 (MQ=255)
                                                                                                                    ccGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTgggg                              >  1:152915/1‑148 (MQ=255)
                                                                                                                      gATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGc                                    <  4:256124/140‑1 (MQ=255)
                                                                                                                      gATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGc                                    >  3:256124/1‑140 (MQ=255)
                                                                                                                       aTCAAGGGATGGTGGTGGTAGGGGTGGACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTTGCTGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAAc                          <  6:66284/149‑1 (MQ=255)
                                                                                                                             ggCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTc                    <  8:80776/149‑1 (MQ=255)
                                                                                                                                      actcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgcg           >  1:27275/5‑149 (MQ=255)
                                                                                                                                       ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgcg           >  5:252442/4‑148 (MQ=255)
                                                                                                                                       ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgcg           >  8:301979/4‑148 (MQ=255)
                                                                                                                                               tGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACttt  <  2:21913/149‑1 (MQ=255)
                                                                                                                                               ggCACACCCCTGACTTCGACTACGAGGATTATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGTGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGGAACCAGTTCTGGCCGGCGCATTACttt  <  4:225155/148‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
CCCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTT  >  NC_002947/2749138‑2749428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: