Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,793,709 | C→G | 9.5% | intergenic (+18/+109) | PP_2445 → / ← PP_2446 | membrane protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,793,709 | 0 | C | G | 9.5% | 119.5 / 4.9 | 42 | intergenic (+18/+109) | PP_2445/PP_2446 | membrane protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (9/29); new base G (2/2); total (11/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 |
TCGCCGAAGGCTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGG > NC_002947/2793561‑2793842 | tCGCCGAAGGCTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTc > 7:334176/1‑149 (MQ=255) ccGAAGGCTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTcgcg > 6:120010/1‑149 (MQ=255) cGAAGGCTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCgcgc < 5:21862/149‑1 (MQ=255) aGGCTTTGGCGCCAATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCGAGGCGcccc < 6:4049/149‑1 (MQ=255) aGGCTTTGGCGCCAATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGcccc < 4:198959/149‑1 (MQ=255) cTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCctct < 2:20024/149‑1 (MQ=255) cTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCctct < 2:25911/149‑1 (MQ=255) ggCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACGTCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGc < 2:201516/148‑1 (MQ=255) gcgcCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCgg < 3:306686/149‑1 (MQ=255) cgcCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGa < 8:324701/149‑1 (MQ=255) gcCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGa > 5:348559/1‑148 (MQ=255) gcCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGa > 2:202291/1‑148 (MQ=255) ccATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑Caa < 5:377008/149‑1 (MQ=255) ccATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑Caa < 8:21491/149‑1 (MQ=255) aTGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACTTCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGc < 1:2106/149‑1 (MQ=255) tACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCg < 5:264595/149‑1 (MQ=255) ggtacatgggCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGccc < 1:250415/141‑1 (MQ=255) ccAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAGAGGGGCGCGAGGCGCCCCtttttaca > 7:138469/1‑133 (MQ=255) cAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGc > 3:302290/1‑149 (MQ=255) aaGGGCTATGTGTATGCGGCCATGGCGTTCTCGCCGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGc < 1:293465/149‑1 (MQ=255) aaGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGca > 2:197634/1‑149 (MQ=255) aGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCg > 2:334717/1‑133 (MQ=255) aGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCg < 1:334717/133‑1 (MQ=255) gggCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGcaca < 5:199786/149‑1 (MQ=255) ggCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAg < 2:48674/149‑1 (MQ=255) ggCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAg < 1:202291/149‑1 (MQ=255) tATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTa > 1:166716/1‑149 (MQ=255) cGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACCAAGCCCGCTGCACAGGTATTCGCGTg < 1:197634/148‑1 (MQ=255) cGGCCATGGCGTTCTAGACGGCTATCGTGGTCCTCAACATCCTGGCCCGTCGAGGGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTgg < 2:330247/148‑1 (MQ=255) tGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGc < 5:346019/149‑1 (MQ=255) ttCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAAcgc < 5:120010/149‑1 (MQ=255) gACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAAt < 3:354441/148‑1 (MQ=255) aCGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCTGA‑CAAGCCCGCTGCACAGGTATTCGCGTTGCCAGTGCCACGCGAATAc < 8:62006/149‑1 (MQ=37) aCGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATAc < 4:302290/149‑1 (MQ=255) aCGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATCTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATAc < 1:336937/149‑1 (MQ=255) cTATCGAGGTCCTCAACTTCCTGGCGCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCtgt < 4:68671/149‑1 (MQ=255) cTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCtgt < 6:348559/149‑1 (MQ=255) aaCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCtg < 6:202336/134‑1 (MQ=255) gTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATc > 8:240325/1‑149 (MQ=255) aaGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCg < 7:280790/137‑1 (MQ=255) aaGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCg > 8:280790/1‑137 (MQ=255) tAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTTCACAGGTATTCGCGTGGCACTGGCAACGGCAATAACTGTGCAGCGGGCATGTCAGTCAGTGGGCTTCGGGAAATCCTGACGTTAGCTCACCCCCGCATGACGCCgg > 8:223294/1‑149 (MQ=255) ggggCGCGAGGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATa > 4:92890/1‑71 (MQ=37) ggggCGCGAGGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATa < 3:92890/71‑1 (MQ=37) | TCGCCGAAGGCTTTGGCGCCCATGTACCCAAGGGCTATGTGTATGCGGCCATGGCGTTCTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGG‑CTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGA‑CAAGCCCGCTGCACAGGTATTCGCGTGGCACTGGCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGG > NC_002947/2793561‑2793842 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |