| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 289,944 | G→C | 7.1% | intergenic (+28/‑138) | oprE → / → PP_0235 | outer‑membrane porin E/peroxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 289,944 | 0 | G | C | 7.1% | 255.3 / 6.9 | 83 | intergenic (+28/‑138) | oprE/PP_0235 | outer‑membrane porin E/peroxidase |
| Reads supporting (aligned to +/- strand): ref base G (38/39); new base C (4/2); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.31e-01 | |||||||||||
GGCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAGCCTC > NC_002947/289797‑290090 | ggCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGa > 4:353932/1‑149 (MQ=255) cACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTACACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGAt < 1:267707/149‑1 (MQ=255) cACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGAt > 2:267707/1‑148 (MQ=255) tctcAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGc > 4:314014/1‑147 (MQ=255) tcAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAgg > 7:290187/1‑149 (MQ=255) cAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGAt > 1:221733/1‑142 (MQ=255) cAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGAt < 2:221733/142‑1 (MQ=255) aaaGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCTAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGACGCCTCGCATCAGGCGAGGc < 7:317875/148‑1 (MQ=255) aaaGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCt > 3:286869/1‑149 (MQ=255) aaaGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCt > 4:163172/1‑149 (MQ=255) aGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCttt < 3:92075/149‑1 (MQ=255) cTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGAt < 1:319646/135‑1 (MQ=255) cTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGAt > 2:319646/1‑135 (MQ=255) cTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTtg > 2:263558/1‑149 (MQ=255) ggCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTtgtg < 6:249330/148‑1 (MQ=255) ggCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGc < 2:125639/149‑1 (MQ=255) ttCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTg < 6:117279/149‑1 (MQ=255) cAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGc < 4:286869/148‑1 (MQ=255) tGCGTCAAGGTGTCTAGCGTTGTAGCGGCGAAAGCGCCCTTGACAAAGTCCAGAGTCGCTTCATGGTGAACTCGACT‑TTCATCTTCCTGTAAGCCGTAGCTGAAATTGAAGCGTCGCGTGATGCGAGGCTTTTTTGTGGCTGCTGAttt < 8:291876/149‑1 (MQ=255) tGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGAtt > 6:358230/1‑148 (MQ=255) cGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTtat < 2:312554/149‑1 (MQ=255) gTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTtata < 3:334056/149‑1 (MQ=255) tCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTatat < 5:315949/149‑1 (MQ=255) tCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTatat < 4:340326/149‑1 (MQ=255) tCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGACTGCAGATTTATATGTATTTTg > 5:254574/1‑149 (MQ=255) tACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGt > 7:192325/1‑149 (MQ=255) cGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTtat < 4:330547/149‑1 (MQ=255) gTGGTAGCGGCGAAAGCGCCCTTGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTtata < 6:186435/149‑1 (MQ=255) cggcgAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATaaataaat > 3:206206/1‑149 (MQ=255) ggcgAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAAtt > 2:78513/1‑149 (MQ=255) aaaGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGtta < 4:206206/149‑1 (MQ=255) aaGCGCCCTGGACAAAGACCAGACTCGCTTCATCCTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGtta < 2:339862/148‑1 (MQ=255) ccTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTta < 5:361349/128‑1 (MQ=255) ccTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTta > 6:361349/1‑128 (MQ=255) tGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCtt > 1:6003/1‑149 (MQ=255) gACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCtttt > 5:381110/1‑149 (MQ=255) gACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCttt < 3:353932/148‑1 (MQ=255) aCAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCttttt > 6:144107/1‑149 (MQ=255) gACCAGACTCGCTTCATCGTTAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTTAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGtttt < 7:53834/149‑1 (MQ=255) ccAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTATTTTTGttttt > 3:325429/1‑148 (MQ=255) gACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAgg < 4:261493/76‑1 (MQ=255) gACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAgg > 3:261493/1‑76 (MQ=255) gACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATc < 3:264303/149‑1 (MQ=255) gCTTCATCGTGAACTTCACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTg < 4:41152/149‑1 (MQ=255) gCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATctagat > 5:47692/1‑144 (MQ=255) gCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATc < 6:47692/144‑1 (MQ=255) gCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGAtt > 6:241619/1‑148 (MQ=255) cTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAGAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGttttt > 7:137146/1‑139 (MQ=255) cTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTg > 1:303470/1‑148 (MQ=255) cTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGc < 5:358230/149‑1 (MQ=255) cTTCATAGTGAACTACACA‑TACAACTTCATGTAAGCCGTAGCTGAGAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGttttt < 8:137146/139‑1 (MQ=255) cATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAg < 6:202719/148‑1 (MQ=255) cATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAg > 3:223666/1‑148 (MQ=255) aaCTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACAtt < 6:254574/148‑1 (MQ=255) aaCTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACAtt < 1:78513/148‑1 (MQ=255) cTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGaa < 8:192325/149‑1 (MQ=255) tACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGTTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCTATTGCAGGCACATTGAAc > 2:375605/1‑149 (MQ=255) tACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAAc > 7:251994/1‑149 (MQ=255) tACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTACAGGCACATTGAAc > 5:290182/1‑149 (MQ=255) tACACT‑TACAACTTCATGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCTAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAAc < 5:144107/149‑1 (MQ=255) aCAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCGGGCACATTGAACCCATa < 3:314014/147‑1 (MQ=255) aCAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATAc < 2:303470/148‑1 (MQ=255) aCAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATAc < 2:6003/148‑1 (MQ=255) aCTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCATATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTa < 8:190829/149‑1 (MQ=255) cTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTa > 1:96548/1‑148 (MQ=255) ccTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACa < 3:163172/147‑1 (MQ=255) gTAAGCCGTAGCTGAAAAAGAAGCCTAGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAAACGATTGCAGGCACATTGAACCCATACGGTACAGAAcc > 3:167501/1‑149 (MQ=255) tAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAAcc < 4:223666/148‑1 (MQ=255) tAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAAcc > 3:226166/1‑148 (MQ=255) aGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAAcccag > 2:137654/1‑149 (MQ=255) gCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAAcccag > 7:249978/1‑148 (MQ=255) tGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGc > 2:140653/1‑149 (MQ=255) acaaaaaaGCCTCGCATCAGGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCg > 4:137875/3‑149 (MQ=255) aaaaaGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGCTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAAACGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGcc < 4:167501/148‑1 (MQ=255) caaaaaaGCCTCGCATCAGGCGAGGCTTCTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCg > 6:127873/2‑148 (MQ=255) aaaaaaGCCTCGCATCAGGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCg > 6:19276/1‑147 (MQ=255) aaaGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCg > 5:137671/1‑147 (MQ=255) aagCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGcc > 3:109333/1‑148 (MQ=255) gCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCAt < 8:249978/149‑1 (MQ=255) gCCTCGCATCAGGCGAGGCTTCTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGa < 6:358422/137‑1 (MQ=255) gCCTCGCATCAGGCGAGGCTTCTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGa > 5:358422/1‑137 (MQ=255) tCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAg > 2:323023/1‑149 (MQ=255) tGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGAACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAGCCTc > 5:338145/1‑148 (MQ=255) gATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTg > 2:257204/1‑42 (MQ=255) gATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTg < 1:257204/42‑1 (MQ=255) | GGCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACT‑TACAACTTCCTGTAAGCCGTAGCTGAAAAAGAAGCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAGCCTC > NC_002947/289797‑290090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |