Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,798,434 G→A 7.5% Q102* (CAG→TAG)  endX ← extracellular DNA endonuclease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,798,4340GA 7.5% 150.0 / 2.1 53Q102* (CAG→TAG) endXextracellular DNA endonuclease
Reads supporting (aligned to +/- strand):  ref base G (30/19);  new base A (2/2);  total (32/21)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.69e-01

TCAGGCAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCAGGAGGCCAGGTTGACCTTGT  >  NC_002947/2798296‑2798580
                                                                                                                                          |                                                                                                                                                  
tCAGGCAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGc                                                                                                                                          >  7:190204/1‑149 (MQ=255)
  aGGCAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCtt                                                                                                                                        <  8:278361/149‑1 (MQ=255)
    gCAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGc                                                                                                                                      >  5:252809/1‑149 (MQ=255)
    gCAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGc                                                                                                                                      <  6:296666/149‑1 (MQ=255)
     cAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTACGAGCACTGCTTGCg                                                                                                                                     >  4:133514/1‑149 (MQ=255)
                    ccGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCa                                                                                                                      <  8:190204/149‑1 (MQ=255)
                     cgcgTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAg                                                                                                                     >  6:202146/1‑149 (MQ=255)
                            ttCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTgg                                                                                                               <  6:252809/148‑1 (MQ=255)
                              cTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACATCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCAtgctgc                                                                                                                                                   >  8:11192/1‑110 (MQ=255)
                                 gTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGgcgc                                                                                                            <  3:32233/146‑1 (MQ=255)
                                      cagccGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGcc                                                                                                    >  7:251491/1‑149 (MQ=255)
                                        gccGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGa                                                                                                  >  7:331477/1‑149 (MQ=255)
                                           gAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCt                                                                                               <  1:90886/149‑1 (MQ=255)
                                           gAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTACGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCt                                                                                               >  2:105358/1‑149 (MQ=255)
                                                    gTTGCTGCGGTCGCCGTTGACCTCCCCGATGCTGGTCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCgg                                                                                      <  3:56685/149‑1 (MQ=255)
                                                           cGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATgg                                                                                                      <  6:141561/126‑1 (MQ=255)
                                                           cGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATgg                                                                                                      >  5:141561/1‑126 (MQ=255)
                                                           cGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGAt                                                                               <  4:293551/149‑1 (MQ=255)
                                                           cGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGAt                                                                               >  4:159192/1‑149 (MQ=255)
                                                                  cGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTcc                                                                        >  3:57961/1‑149 (MQ=255)
                                                                       aCCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTc                                                                   >  3:305622/1‑149 (MQ=255)
                                                                         cTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCtt                                                                                                                                        <  3:18879/78‑1 (MQ=255)
                                                                         cTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCtt                                                                                                                                        >  4:18879/1‑78 (MQ=255)
                                                                         cTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGa                                                                 >  2:222269/1‑149 (MQ=255)
                                                                          tCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGAt                                                                >  2:320848/1‑149 (MQ=255)
                                                                           cACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCg                                                                                       >  3:97618/1‑125 (MQ=255)
                                                                           cACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCg                                                                                       <  4:97618/125‑1 (MQ=255)
                                                                           cACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATg                                                               <  8:251491/149‑1 (MQ=255)
                                                                           cACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATg                                                               >  7:200353/1‑149 (MQ=255)
                                                                            aCCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGc                                                              >  7:184470/1‑149 (MQ=255)
                                                                                aTGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGa                                                          <  8:200353/149‑1 (MQ=255)
                                                                                      ggCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGAcgcgcg                                                    >  3:23237/1‑149 (MQ=255)
                                                                                         aCCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCTAGCACTGCTTGTGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTg                                                 <  8:331477/149‑1 (MQ=255)
                                                                                         aCCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCCCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGCGTACGATGTGCTCACACTCGATGCGTGAAGCGCGCTg                                                 >  8:73215/1‑149 (MQ=255)
                                                                                          ccAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTACGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTgg                                                <  1:105358/149‑1 (MQ=255)
                                                                                             ggTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTgg                                                <  4:114818/146‑1 (MQ=255)
                                                                                             ggTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTgg                                                >  3:114818/1‑146 (MQ=255)
                                                                                              gTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCAt                                            >  3:152410/1‑149 (MQ=255)
                                                                                                  tgCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTACGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCtt                                        <  3:133514/149‑1 (MQ=255)
                                                                                                   gCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTg                                       >  5:162725/1‑149 (MQ=255)
                                                                                                      ggTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGt                                    <  4:23237/149‑1 (MQ=255)
                                                                                                        tCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTgg                                  <  4:152410/149‑1 (MQ=255)
                                                                                                         cGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTggg                                 <  5:202146/149‑1 (MQ=255)
                                                                                                            cTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCa                              >  2:7243/1‑149 (MQ=255)
                                                                                                                 gcgcGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTAAGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGcc                         <  8:184470/149‑1 (MQ=255)
                                                                                                                        ggTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCaggag                  >  5:145264/1‑149 (MQ=255)
                                                                                                                         gTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCaggagg                 >  7:317504/1‑149 (MQ=255)
                                                                                                                         gTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCaggagg                 >  7:114032/1‑149 (MQ=255)
                                                                                                                         gTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCaggagg                 >  7:344987/1‑149 (MQ=255)
                                                                                                                             acTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCAGGAGGCCAg             >  8:173217/1‑149 (MQ=255)
                                                                                                                               ttCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCAGGAGGCCAGGt           >  4:313484/1‑149 (MQ=255)
                                                                                                                               ttCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCAGGAGGCCAGGt           >  3:61919/1‑149 (MQ=255)
                                                                                                                               ttCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGATGATGGCCGATCTGCCAGGCGGGTACGATGTCCTCCCACTCGATGCGTGACGCCCGCTGGGCATTCTTCCGTGGGGCATAGCCGCAGGAGGCCAgct           >  4:269720/1‑147 (MQ=255)
                                                                                                                                   tCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCAGGAGGCCAGGTTGAc       >  1:5505/1‑149 (MQ=255)
                                                                                                                                        ctgcGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCAAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCTGTCTTGCGTGGGGCATAGCCGCAGGAGGCGAGGTTGACCttgt  >  4:310118/1‑149 (MQ=255)
                                                                                                                                          |                                                                                                                                                  
TCAGGCAGCGGCCATACTGGCCGCGTTGTTCTGGTAGCCAGCCGAAACTGAAGTTGCTGCGGTCGCCGTTGACCTCACCGATGCTGGGCACCAGGTTGTGCAGGTCGGCTTCGGCGCGTTGGTACACTTCGTCATGCTGCGAGCACTGCTTGCGTCCGCCACTCTGCCAGCACTGGCGCTGATGGCCGATCTGCCAGGCGGGTACGATGTGCTCCCACTCGATGCGTGACGCGCGCTGGGCATTCTTGCGTGGGGCATAGCCGCAGGAGGCCAGGTTGACCTTGT  >  NC_002947/2798296‑2798580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑