| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 85,081 | T→G | 6.4% | intergenic (+59/+71) | aroE → / ← PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 85,081 | 0 | T | G | 6.4% | 205.6 / 4.7 | 74 | intergenic (+59/+71) | aroE/PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter |
| Reads supporting (aligned to +/- strand): ref base T (34/33); new base G (3/2); total (38/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.51e-01 | |||||||||||
GCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGG > NC_002947/84933‑85225 | gcagCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑cgt > 8:90140/1‑149 (MQ=255) gAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTaag > 3:243094/1‑147 (MQ=255) gAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACg > 6:195985/1‑149 (MQ=255) aaGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTTAGGCTGAACTCCGCC‑GGCAAATCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACg > 1:89775/1‑149 (MQ=255) aaGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTAc < 4:185499/147‑1 (MQ=255) ccTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGACGTACGCCg > 2:316726/1‑148 (MQ=255) ttcttTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCTTACGCCGATc > 8:349910/1‑149 (MQ=255) tcttTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACCCCGATc > 2:260980/1‑148 (MQ=255) cttTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCCTGGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATcc > 1:103576/1‑149 (MQ=255) tATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCctct < 5:279175/148‑1 (MQ=255) tATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGAGCCTCtg > 7:171332/1‑149 (MQ=255) aTCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCtgt > 8:1168/1‑149 (MQ=255) aTCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCtg < 6:330833/148‑1 (MQ=255) aTCTGGCGTGGCGTGAGGCCGGATACGGCGCCGATGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGCCCCAACGCCCGTGCCCA‑AAAGTA‑AGTCCTACGCCGATccgccgt > 1:185671/1‑144 (MQ=255) gcgtggcgtgAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAg > 7:77554/1‑149 (MQ=255) gtggcgtgAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCg > 1:222489/1‑149 (MQ=255) cgtgAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCt < 2:369192/149‑1 (MQ=255) gtgAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTTCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCtt < 2:89775/149‑1 (MQ=255) tgAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTg < 7:196157/149‑1 (MQ=255) cGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCCATCGCGACGCAA‑GGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTcgc < 3:229799/149‑1 (MQ=18) ggATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTcgc > 5:76445/1‑148 (MQ=255) ggATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTcgc > 7:109265/1‑148 (MQ=255) gATACGGCGCCGGTGTG‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGa < 1:54888/149‑1 (MQ=255) tACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGGCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATg < 7:181319/149‑1 (MQ=255) gcCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTgg < 5:219973/122‑1 (MQ=255) gcCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGc < 2:222489/149‑1 (MQ=255) gcCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATAGCGACGCAA‑GGCCGTTCCCACCAAGTA‑AGTCGTACGCCGCTCCTCTGTgg > 6:219973/1‑122 (MQ=255) gtgtT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAg > 8:15633/1‑149 (MQ=255) tt‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCa < 7:1168/148‑1 (MQ=255) gCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGAc < 8:77554/148‑1 (MQ=255) tGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑cgt < 7:85751/90‑1 (MQ=255) tGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑cgt > 8:85751/1‑90 (MQ=255) cgcC‑GGCAACTCGCTCGGGGCTGAGGTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATcc < 2:103576/148‑1 (MQ=255) cc‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCaa < 6:312013/149‑1 (MQ=255) c‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATGCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCCAc > 2:4256/1‑149 (MQ=255) c‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAAc < 7:274399/149‑1 (MQ=255) ggCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAAcc > 3:32484/1‑149 (MQ=255) aCTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCAt > 5:185470/1‑149 (MQ=255) ctcgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCAtt < 7:290562/149‑1 (MQ=255) tcgctcgGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCCTTCCCACAAACTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTGGCCATGGGCAGCAAAGCCGACCCAGAAACCCCACCTCATTc > 1:145923/1‑149 (MQ=38) gggCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAAc < 7:90140/149‑1 (MQ=255) gCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCg < 7:15633/149‑1 (MQ=255) cTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCgg < 5:159148/149‑1 (MQ=255) ggggCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACaa > 1:53370/1‑149 (MQ=255) gCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCACCATCCTTCCTCAAACCGGATCGGGCACAACTc > 3:89643/1‑149 (MQ=255) gCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAAcc > 4:84531/1‑116 (MQ=255) gCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAAcc < 3:84531/116‑1 (MQ=255) gCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCAc < 2:53370/149‑1 (MQ=255) gcggcCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCAccc < 5:130602/146‑1 (MQ=255) gcggcCCTATCGCGACGCAA‑GGCCCTTCCCACAAAGTA‑CGTCGTACGCCGAACCTCTGTGGGAGCGGCCATGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCAATACTCAAACCGGAACGGGCACAACTCCAccc > 6:130602/1‑146 (MQ=39) ggcCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTcc < 5:195985/149‑1 (MQ=255) tATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCtt > 3:99408/1‑149 (MQ=255) tCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATACTCTGTGGGAGCGGCCTTTCGTCGCGATGGGCTGCAAAGCAGACCCAGAATACCAACCACATTCCTCAAACCGGATCGGGCACAACTCCACCCCGTGCAGCGTCt > 4:21830/1‑149 (MQ=38) gACGCAA‑GGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTGGCGTCGCGATAGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCaa > 7:79342/1‑149 (MQ=18) aCGCAC‑TGCCGTTCCCACAAAGTA‑CGACGTCCGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAAc < 4:243094/149‑1 (MQ=255) cGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCCGACCCAGACTCCCAACCTCATTCCTCAACCCGGATCGGGCACAACTCCCCCCCTGCCAGCTTCTGCCAct > 3:209851/1‑149 (MQ=39) gCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAAgtc > 5:298229/1‑149 (MQ=255) gCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActc < 8:171332/149‑1 (MQ=255) aa‑GGCCTTTCCAACAAAGTA‑CTTCGTACGCCTATCCTCTGTGTGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCACAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTTCAActcct < 7:349910/149‑1 (MQ=38) aa‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActcct < 5:268781/149‑1 (MQ=255) a‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActcctc < 6:185470/149‑1 (MQ=255) gCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActcc < 7:310081/145‑1 (MQ=255) gCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActcc > 8:310081/1‑145 (MQ=255) gCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACACCTTCCAGCTTCTGCAAATCCTCGa > 1:238236/1‑149 (MQ=255) cGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTg < 3:131926/136‑1 (MQ=255) cGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTg > 4:131926/1‑136 (MQ=255) gTTCCCACAAAGTA‑CGTCGTACGCCTATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCa < 3:188036/149‑1 (MQ=255) tCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCAcc > 8:98167/1‑149 (MQ=25) tCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCAcc > 8:103445/1‑149 (MQ=25) cccACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAAc < 8:257796/83‑1 (MQ=255) ccACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATc < 8:203133/144‑1 (MQ=255) ccACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATc > 7:203133/1‑144 (MQ=255) ccACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTg > 8:347034/1‑149 (MQ=255) acaAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCg < 1:260980/149‑1 (MQ=255) aaaGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGc > 3:264723/1‑149 (MQ=255) aaGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAActc > 6:179058/1‑132 (MQ=255) a‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTgg < 6:76445/148‑1 (MQ=255) gtcgtACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGc < 8:192939/142‑1 (MQ=255) gtcgtACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGc > 7:192939/1‑142 (MQ=255) | GCAGCTGAAGCCTTCTTTATCTGGCGTGGCGTGAGGCCGGATACGGCGCCGGTGTT‑GGCTGAACTGCGCC‑GGCAACTCGCTCGGGGCTGAGCTGGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAA‑GGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGG > NC_002947/84933‑85225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |