Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,998,850 | G→A | 8.0% | S46S (TCC→TCT) | PP_2622 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,998,850 | 0 | G | A | 8.0% | 145.3 / 2.2 | 51 | S46S (TCC→TCT) | PP_2622 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (20/26); new base A (2/2); total (23/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
GGGCACTGCGTTGAGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCAAAAAGACCACTCATTGCGTATCGAG > NC_002947/2998703‑2998998 | gggCACTGCGTTGAGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCTGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTgg < 1:182639/148‑1 (MQ=255) gggCACTGCGTTGAGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTgg < 7:174832/148‑1 (MQ=255) cGTTGAGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCAcc < 7:342107/147‑1 (MQ=255) ttGAGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTg > 7:26175/1‑149 (MQ=255) aGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑Gc < 2:331763/148‑1 (MQ=255) gcgtgcgtACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTCAAGGGCTGCTCTGGGAGCACCCCTG‑GC‑g < 8:75477/149‑1 (MQ=255) gcgtACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCAt > 1:348275/1‑149 (MQ=255) aCCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTcag > 1:294228/1‑149 (MQ=255) cTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTcag > 2:97995/1‑147 (MQ=255) cTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTcag > 2:173994/1‑147 (MQ=255) gcgGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTc > 1:358338/1‑148 (MQ=255) cgGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGa < 2:63699/149‑1 (MQ=255) ggCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAg > 5:119150/1‑149 (MQ=255) cTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGt < 1:9641/149‑1 (MQ=255) cTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGt < 1:97995/149‑1 (MQ=255) gAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTgg < 2:294228/148‑1 (MQ=255) aGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGgcgc < 5:3030/149‑1 (MQ=255) tGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGAt > 3:183190/1‑149 (MQ=255) gAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATgg > 5:59070/1‑149 (MQ=255) gggTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATggcg < 1:177446/149‑1 (MQ=255) gTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATggcggc > 5:143074/1‑149 (MQ=255) cggcggATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGaa < 6:308936/149‑1 (MQ=255) cggcggATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGaa < 6:119150/149‑1 (MQ=255) cggATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGAGGGCGGCGAACtt < 2:348275/149‑1 (MQ=255) gATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTtgt < 6:220718/149‑1 (MQ=255) tCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGTGCACCCCTG‑GC‑CGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGct > 7:121713/1‑148 (MQ=255) aCCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCtctc < 5:365686/149‑1 (MQ=255) aCCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCtctc < 6:59070/149‑1 (MQ=255) ccTCCACAAACAAGTCGCCGTTGCTCAAGTCATGCCCATTGAAGTCGCGCAAGCCCAGCTC‑AGGGCTCCTCTCCCAGCACCCCTC‑GC‑GGGCATTCAGCAGCGTATCGAGGTGGCTCTAGATGGCGGCGAACTTGTGGCAACCGctctac > 4:274808/1‑147 (MQ=255) cTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGACCTTGTGGGAAGCGCTCTccc > 6:44227/1‑149 (MQ=255) acaAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCg < 1:173994/149‑1 (MQ=255) aagcaagTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCggg < 6:143074/149‑1 (MQ=255) agcaagTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGa < 5:354342/149‑1 (MQ=255) gcaagTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAg < 7:251931/149‑1 (MQ=255) aagTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGc < 2:358338/149‑1 (MQ=255) agTCGCCGGTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCGGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGACGGGAgagc < 7:286870/149‑4 (MQ=255) gCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCAtt < 2:58463/78‑1 (MQ=255) gCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCAtt > 1:58463/1‑78 (MQ=255) aTGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGt < 2:302079/149‑1 (MQ=255) gCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTc > 7:276932/1‑148 (MQ=255) aaGTCGCGCAGGCCCAGCGC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCa < 4:93861/148‑1 (MQ=255) aGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTcca < 3:183592/141‑1 (MQ=255) aGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTcca > 4:183592/1‑141 (MQ=255) tCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGc > 2:341147/1‑148 (MQ=255) gcgcAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGAt > 2:356682/1‑149 (MQ=255) gCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCaaa > 2:175563/1‑147 (MQ=255) ccgcc‑AGGGGTGCTCCCAGAGCAGCCCTGAGCTGGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGa > 2:271675/5‑103 (MQ=21) ccgcc‑AGGGGTGCTCCCAGAGCAGCCCTGAGCTGGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGa < 1:271675/99‑1 (MQ=21) cTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCAAAAAGACCAc > 3:89845/1‑149 (MQ=255) aGGGGTGCTCCCAGAGCAGCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCaaaaa > 1:102287/1‑140 (MQ=255) aGGGGTGCTCCCAGAGCAGCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCaaaaa < 2:102287/140‑1 (MQ=255) ggCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTtgt > 2:234705/1‑72 (MQ=255) ggCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTtgt < 1:234705/72‑1 (MQ=255) ggAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCAAAAAGACCACTCATTGCGTATCGAg < 1:341147/149‑1 (MQ=255) | GGGCACTGCGTTGAGCGTGCGTACCTGTATGCGCGGCTCGAAGCGCTGGAGGGTGCGGCGGATATCCGCGCTCACCTGCACAAGCAAGTCGCCGTTGCTCACGTCATGCCCATTGAAGTCGCGCAGGCCCAGCTC‑AGGGCTGCTCTGGGAGCACCCCTG‑GC‑GGGCATTCAGCAGCGTTTCGAGGTGGCGCTTGATGGCGGCGAACTTGTGGGAAGCGCTCTCCCGTCGGGAGGCCTCTCGGCGGGTGCACTGGTCCACCATCAGGCGATCAAAAAGACCACTCATTGCGTATCGAG > NC_002947/2998703‑2998998 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |