Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,312,690 | A→C | 7.8% | intergenic (+31/‑131) | PP_2912 → / → hemB | hypothetical protein/5‑aminolevulinate dehydratase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,312,690 | 0 | A | C | 7.8% | 121.8 / 4.7 | 52 | intergenic (+31/‑131) | PP_2912/hemB | hypothetical protein/5‑aminolevulinate dehydratase |
Reads supporting (aligned to +/- strand): ref base A (25/23); new base C (2/2); total (27/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.14e-01 |
GATGCGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTC > NC_002947/3312545‑3312835 | gATGCGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTAccc < 2:356705/149‑1 (MQ=255) gTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGaa < 4:267551/149‑1 (MQ=255) agaTCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGTAACCCCGCGAagag < 5:233407/149‑1 (MQ=255) agaTCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAaga < 6:163480/148‑1 (MQ=255) gaTCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAgg > 6:355230/1‑149 (MQ=255) aCGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTAGCGGGGTTACCCGCGCAGAGGCCacc > 6:201349/1‑147 (MQ=255) cgccgcCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGAACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAaca < 3:235926/149‑1 (MQ=255) ccGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGc > 7:64394/1‑148 (MQ=255) ggACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAgg < 4:316213/141‑1 (MQ=255) ggACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAgg > 3:316213/1‑141 (MQ=255) gacgacGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACg < 8:64394/149‑1 (MQ=255) gCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACCGGCAAACCACGGCCGtt > 6:148840/1‑149 (MQ=255) gCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGtt < 4:121068/149‑1 (MQ=255) gtcgCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCCAACCACGGCCGTTGCCa > 1:161343/1‑149 (MQ=255) cgCCGTGCAGCAGGCGCCGTGGCCTCGCTTGGGCCGGCCAAGGCTGTGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCTATGAGGCCAACACAGGCAAACCACGGCCGTTGCCAtt < 2:161343/149‑1 (MQ=255) gCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCAtt > 4:136754/1‑148 (MQ=255) gccgaggccgagCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAACCCACGGCCGTTGCCATTGACGCAAGACACAtt > 8:270816/1‑149 (MQ=255) gagCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCagt > 4:147429/1‑147 (MQ=255) ggccggccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCtt > 5:77641/1‑149 (MQ=255) gccggccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCttt > 3:270830/1‑149 (MQ=255) ccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGTAACCCCGCGAag < 3:45352/78‑1 (MQ=38) ccAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGTAACCCCGCGAag > 4:45352/1‑78 (MQ=38) cAAGGCAGTGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCGGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTg < 3:12333/149‑1 (MQ=255) cAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTg < 2:78911/149‑1 (MQ=255) cAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTAGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTg > 1:6206/1‑149 (MQ=255) ggCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGgcg > 5:19634/1‑149 (MQ=255) agagGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGgcgcgc < 7:103871/149‑1 (MQ=255) aggTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAg < 4:270830/149‑1 (MQ=255) gTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGc < 5:201349/149‑1 (MQ=255) gccgccGTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCTGGCTTACCTGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATAGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGTCGCGCTACAGGCATAAg < 8:158891/149‑1 (MQ=255) gccgccCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCAt < 5:3281/116‑1 (MQ=255) gccgccCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCAt > 6:3281/1‑116 (MQ=255) agtagtTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACAATGTCGGCATTTAGCAATTTAACTGGAGCGCGACACGCATTATGTATACGCAGtta > 8:355502/1‑147 (MQ=255) tagtTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCaaa > 1:252542/1‑149 (MQ=255) tagtTTATTCCTGTACCGCCTCTTCGCGGGGGTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACGGGCGCGCGACAGGCTTAAGGTTTACGCCGTTCaaa > 5:179911/1‑149 (MQ=255) agtTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCaaa < 3:136754/148‑1 (MQ=255) gtTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAAtt > 5:111477/1‑149 (MQ=255) ttCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTg < 7:355502/149‑1 (MQ=255) tCCTGTACCGCCAATTAGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTTACGCAAGACACATTCTAGTCATTTAACCTTTTAACTGGCGCGCCACAGGCATAAGGTATACGCCCTTCAAAATACCTg > 8:1861/1‑148 (MQ=255) cTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTAGTCATTTAGCCTTTTAACTGGCGCGCGACAGGCATAAGGTATAAGCCGTTCAAATTACCTGGAg > 6:287627/1‑149 (MQ=255) aCCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGt > 2:212165/1‑149 (MQ=255) ccGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGt < 7:1861/148‑1 (MQ=255) gCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTc > 5:338978/1‑135 (MQ=255) gCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTc < 6:338978/135‑1 (MQ=255) ccTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATg > 4:247327/1‑149 (MQ=255) ctctTCGCGGGTAACCCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCCCTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGt > 3:224567/1‑149 (MQ=255) tctTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTc > 4:3375/1‑149 (MQ=255) ttCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTcc > 1:182753/1‑148 (MQ=255) cgcgGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTTCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTcc < 6:111477/146‑1 (MQ=255) cgcgGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTccaa < 2:41317/148‑1 (MQ=255) gTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTc < 6:77641/149‑1 (MQ=255) gTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTc < 3:3375/149‑1 (MQ=255) | GATGCGTGAGATCGACGCCGCCCGGATGGACGACGCTCGTCGCCGTGCAGCACGCGCCGAGGCCGAGCATGGGCCGGCCAAGGCAGAGGAGGTAACGCCGCCCTGGCTGCAGTAGTTTATTCCTGTACCGCCTCTTCGCGGGGTTACCCGCGAAGAGGCCAACACAGGCAAACCACGGCCGTTGCCATTGACGCAAGACACATTCTCGTCATTTAGCCTTTTCACTGGCGCGCGACAGGCATAAGGTATACGCCGTTCAAATTCCCTGGAGCTGTCATGTCCAACCAATTC > NC_002947/3312545‑3312835 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |