Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,325,698 | C→T | 11.7% | L151L (CTG→TTG) ‡ | mqo‑III → | malate:quinone oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,325,698 | 0 | C | T | 11.7% | 128.9 / 7.2 | 51 | L151L (CTG→TTG) ‡ | mqo‑III | malate:quinone oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (24/21); new base T (3/3); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.77e-01 |
TTGAAATCAACGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGACCTGGACGCCG > NC_002947/3325558‑3325844 | ttGAAATCAACGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCTAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGaagaag < 5:524/149‑1 (MQ=255) aaaTCAACGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGTAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAgcgc > 2:365123/1‑149 (MQ=255) aTCAACGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAgcggat < 5:67728/149‑4 (MQ=255) aTCAACGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTa < 1:32055/149‑1 (MQ=255) aaCGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCTTCAGGAAgcggatatt < 7:287426/149‑7 (MQ=37) aCGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAg < 5:227782/149‑1 (MQ=255) aCGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAg > 4:14538/1‑149 (MQ=255) gAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAACCCCGCATTCGTTCATCAACCCCACCCCGCACATGAGCTGTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGgc > 4:330732/1‑149 (MQ=255) gTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGgcgc > 5:204147/1‑149 (MQ=255) tAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGc > 1:183580/1‑149 (MQ=255) aaCGCGACATTTTCTATCCTGGCAGGTCAAGCAGGGCGTTCTGAAAAACCAGCATTCGTTCATCAACACAACACCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCAGAAGAAGCGCTACGAGCCGCTGCAGGCCAGcc > 6:372539/1‑149 (MQ=255) aCGCGCGAGTTTCTCGCGTGGGAGGTCTAGCAGGGCGTGCTGAAAAACCCGCTTTCGTTCATCAACACGACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCGGCTTCCTGTTGAATCGCTAGGAGGCGCTGGAGGCCAGcc < 8:72148/148‑1 (MQ=255) gcgcCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCCCCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGccccc > 7:311161/1‑149 (MQ=255) gcgcCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGccccc > 1:166076/1‑149 (MQ=255) gcgcCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGccccc < 8:69067/149‑1 (MQ=255) gcgcCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGccccc < 3:254258/149‑1 (MQ=255) ttCTCGCCTGGCAGCTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCAACGAGCCGCTGCAGGCCAGCCACCTCTTCaaa > 6:166158/1‑149 (MQ=25) tctcGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAAc > 3:244457/1‑149 (MQ=255) cGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCa > 3:185932/1‑149 (MQ=255) ccTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATg < 5:166158/149‑1 (MQ=255) aGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCACACCCATGCAGTa > 6:357073/1‑148 (MQ=255) aaGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAg > 1:296851/1‑141 (MQ=255) aaGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAg < 2:296851/141‑1 (MQ=255) cAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGa < 3:14538/149‑1 (MQ=255) tGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAg < 2:166076/149‑1 (MQ=255) cTGAAAAACGCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTATGGTTCGATGACAATATCCGCTTCCTGAAGAAGCTCTACGAGGCGCTGCAGGTCAGCCCCCTGTTCAAACCAATGCAGTACTCCGAAGACCACTAGc < 5:372539/148‑1 (MQ=21) tGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCa < 8:147886/127‑1 (MQ=255) tGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCa > 7:147886/1‑127 (MQ=255) tGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCAc < 2:51703/143‑1 (MQ=255) tGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCAc > 1:51703/1‑143 (MQ=255) ccGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCa > 7:143794/1‑148 (MQ=255) tcatcaACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGCCCCCGAGCAGATCCGCAAATGGGTCCCg > 8:173509/1‑149 (MQ=255) catcaACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCg < 6:204147/148‑1 (MQ=255) tcaACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCt > 8:20523/1‑148 (MQ=255) caACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAAc < 1:348063/98‑1 (MQ=255) caACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAAc > 2:348063/1‑98 (MQ=255) aaCACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCtga < 2:108672/148‑1 (MQ=255) accCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATgg > 4:194051/1‑148 (MQ=255) ccGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAgg < 5:357073/149‑1 (MQ=255) caTGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCcgcg < 2:183580/149‑1 (MQ=255) tGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCaa < 8:143794/147‑1 (MQ=255) gCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTg < 1:365123/149‑1 (MQ=255) cAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGa > 7:185237/1‑149 (MQ=255) aaTATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGAc > 1:52431/1‑149 (MQ=255) tagcGCTTCTTCAGGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTg < 1:37387/135‑1 (MQ=255) tagcGCTTCTTCAGGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTg > 2:37387/4‑138 (MQ=255) agcGCTTCTTCAGGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCACCCAGAAGCTGGCCGTGACCTg > 2:243686/3‑148 (MQ=255) gcGCTTCTTCAGGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAAc > 1:246313/2‑127 (MQ=255) gcGCTTCTTCAGGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAAc < 2:246313/126‑1 (MQ=255) ccGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGACCTGGa > 5:89190/1‑149 (MQ=255) cTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGACCTGGACGc > 3:171756/1‑149 (MQ=255) ccTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGACCTGGACGCCg < 4:244457/148‑1 (MQ=255) | TTGAAATCAACGAGTCGTTCCAGGTAACGCGCCAGTTTCTCGCCTGGCAGGTCAAGCAGGGCGTGCTGAAAAACCCGCATTCGTTCATCAACACCACCCCGCACATGAGCTTTGTCTGGGGCGATGACAATATCCGCTTCCTGAAGAAGCGCTACGAGGCGCTGCAGGCCAGCCCCCTGTTCAAACCCATGCAGTACTCCGAAGACCACGAGCAGATCCGCAAATGGGTCCCGCTGATGATGGAAGGCCGCGATCCCAACCAGAAGCTGGCCGTGACCTGGACGCCG > NC_002947/3325558‑3325844 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |