| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,339,218 | A→G | 11.1% | intergenic (‑220/+23) | PP_2935 ← / ← ybiT | membrane protein/ABC‑F family ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,339,218 | 0 | A | G | 11.1% | 91.1 / 3.7 | 36 | intergenic (‑220/+23) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase |
| Reads supporting (aligned to +/- strand): ref base A (17/15); new base G (2/2); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
AACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGA > NC_002947/3339071‑3339365 | aaCGAATTATTCGGCGGGCCGTGCCGGTCGGTGGGAGGGGGATGTACTCTTCGCGGGCTGCCCCGCTCTCCCACGGCCCCACAAGCGTCCAATACCTGTGCGGCCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCgag < 5:27772/149‑1 (MQ=39) cGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGTGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGAt < 6:65258/149‑1 (MQ=255) cgtcgGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCTGGCCATCTCGGATGGCCGGGc < 1:55115/148‑1 (MQ=39) gtcgGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCTCGGATGGccgg > 6:383539/1‑143 (MQ=255) gtcgGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCTCGGATGGccgg < 5:383539/145‑3 (MQ=255) gggCCGTGCCGGGCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTcc < 3:349231/149‑1 (MQ=255) gCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCatcaa > 2:80325/1‑148 (MQ=255) cggtcggtGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCatcaatca > 7:76192/1‑149 (MQ=255) tcggtGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGAc < 8:76192/149‑1 (MQ=255) gCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGt < 8:173010/148‑1 (MQ=255) cccGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGcc < 6:193629/99‑1 (MQ=255) cccGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTa < 8:269377/148‑1 (MQ=255) ccGCTCTCCCAAGGCCCCACAAGCGTCCAAAACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCCGAAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAgg > 5:269056/1‑149 (MQ=255) tcCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGACTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGc > 3:78026/1‑149 (MQ=255) ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAg < 7:18351/127‑1 (MQ=255) ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAg > 8:18351/1‑127 (MQ=255) cAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTg > 1:196456/1‑148 (MQ=255) aaGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTg > 4:256533/1‑147 (MQ=255) aaGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTg > 5:278936/1‑147 (MQ=255) aaGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGaa < 3:256533/149‑1 (MQ=255) gCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTc < 6:278936/149‑1 (MQ=255) cccACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTcca < 3:211778/149‑1 (MQ=255) tCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATc > 5:144099/1‑149 (MQ=255) cacatcacTGGGCGGTCCCTGTGGGAGGGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCg < 7:312900/142‑1 (MQ=255) cAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCg < 6:144099/148‑1 (MQ=255) aaTACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGc < 1:80325/149‑1 (MQ=255) cTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGa > 3:250798/1‑147 (MQ=255) tgtgCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAg > 6:87458/1‑149 (MQ=255) tgtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATgc > 1:57015/1‑149 (MQ=255) tgtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATgc > 1:84932/1‑149 (MQ=255) tgtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCAACCACACCATCGGCCGACAGCTCGATGATgc > 2:306733/1‑149 (MQ=255) gAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGCCCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTg > 6:256231/1‑149 (MQ=255) gAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTg < 2:84932/149‑1 (MQ=255) ccGCGAAGAGGCCCGGCCATCCGGGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGcgacga > 2:102603/1‑148 (MQ=255) gcgAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGacac > 4:2208/1‑149 (MQ=255) cccGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTcgcg > 4:141599/1‑149 (MQ=255) tCCGAGATTGGCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGATTTATGTTAGTTACTTTTTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGt < 1:306733/149‑1 (MQ=255) gagaTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGa > 7:181329/1‑149 (MQ=255) | AACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAG‑‑TCATCGTAGGTAC‑CGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGA > NC_002947/3339071‑3339365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |