Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,788,425 C→T 100% W70* (TGG→TGA)  PP_3350 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,788,4250CT100.0% 288.6 / NA 92W70* (TGG→TGA) PP_3350hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (46/46);  total (46/46)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC  >  NC_002947/3788283‑3788568
                                                                                                                                              |                                                                                                                                               
gCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGcc                                                                                                                                           >  8:194596/1‑149 (MQ=255)
  aCGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCg                                                                                                                                          >  5:303395/1‑148 (MQ=255)
  aCGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGa                                                                                                                                         >  3:272919/1‑149 (MQ=255)
      cATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGActct                                                                                                                                     <  1:280815/149‑1 (MQ=255)
       aTCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTg                                                                                                                                    <  8:7348/149‑1 (MQ=255)
          gtcgAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCTTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACa                                                                                                                                 <  6:273751/149‑1 (MQ=255)
          gtcgAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACa                                                                                                                                 <  5:373253/149‑1 (MQ=255)
          gtcgAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACa                                                                                                                                 >  7:288616/1‑149 (MQ=255)
           tcgAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTCCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAg                                                                                                                                >  8:211140/1‑149 (MQ=255)
             gAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGcc                                                                                                                              <  6:125248/149‑1 (MQ=255)
              aaCAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGcc                                                                                                                              >  5:170434/1‑148 (MQ=255)
               aCAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGAc                                                                                                                                        <  3:282129/137‑1 (MQ=255)
               aCAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGAc                                                                                                                                        >  4:282129/1‑137 (MQ=255)
                cAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGAt                                                                                                                           >  7:184308/1‑149 (MQ=255)
                 aGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATg                                                                                                                          <  8:68597/149‑1 (MQ=255)
                  ggTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATgg                                                                                                                         >  7:79895/1‑149 (MQ=255)
                    tGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTa                                                                                                                       <  6:117030/149‑1 (MQ=255)
                        ggTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAgcgc                                                                                                                   <  1:41003/149‑1 (MQ=255)
                         gTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAgcg                                                                                                                    >  5:157627/1‑147 (MQ=255)
                           cGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAgg                                                                                                                <  6:157627/149‑1 (MQ=255)
                             gCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGACGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAgga                                                                                                               >  6:127690/1‑147 (MQ=255)
                              cATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCGAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATg                                                                                                                          >  7:308978/1‑136 (MQ=255)
                              cATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCGAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATg                                                                                                                          <  8:308978/136‑1 (MQ=255)
                                 gggCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGa                                                                                                                            <  8:148687/131‑1 (MQ=255)
                                 gggCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGa                                                                                                                            >  7:148687/1‑131 (MQ=255)
                                     cTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGCCAGCCGATGGTAGCGCAGGCCAGCGAAAg                                                                                                      >  4:245675/1‑149 (MQ=255)
                                     cTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAg                                                                                                      >  1:291394/1‑149 (MQ=255)
                                        cAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAggg                                                                                                    <  3:28109/148‑1 (MQ=255)
                                        cAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAgg                                                                                                     <  8:9807/147‑1 (MQ=255)
                                         aGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGc                                                                                                  <  2:291394/149‑1 (MQ=255)
                                              ttGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTgg                                                                                             >  1:329757/1‑149 (MQ=255)
                                              ttGCTGCAGATAGGAATCGTCGTCCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTgg                                                                                             <  7:211140/149‑1 (MQ=255)
                                                  tgcAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCtt                                                                                         >  3:49292/1‑149 (MQ=255)
                                                   gcAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTg                                                                                        >  1:121586/1‑149 (MQ=255)
                                                     aGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCAt                                                                                                            <  7:319482/127‑1 (MQ=255)
                                                     aGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCAt                                                                                                            >  8:319482/1‑127 (MQ=255)
                                                      gATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCg                                                                                     <  1:225504/149‑1 (MQ=255)
                                                      gATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCAGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCg                                                                                     >  5:320579/1‑149 (MQ=255)
                                                       aTAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGGCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCgg                                                                                    >  8:244528/1‑149 (MQ=255)
                                                       aTAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCgg                                                                                    >  4:12139/1‑149 (MQ=255)
                                                         aGGATTCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCTACTCTTACAGCCGATGGTAGCGCAGGCCATc                                                                                                           <  1:40248/124‑1 (MQ=255)
                                                         aGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCgggg                                                                                  >  3:138920/1‑149 (MQ=255)
                                                         aGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAACGGTTAGTCCGAAGCATCGGCCCGGTAGCGGGACTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGAAAGACGATGGTATCGCAGGCCATc                                                                                                           >  2:40248/1‑124 (MQ=255)
                                                          ggAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCgggg                                                                                  <  8:288616/148‑1 (MQ=255)
                                                          ggAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCgggg                                                                                  <  7:194596/148‑1 (MQ=255)
                                                           gAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAgg                                                                                                     >  8:316329/1‑128 (MQ=255)
                                                           gAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAgg                                                                                                     <  7:316329/128‑1 (MQ=255)
                                                           gAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTg                                                                                              >  6:340818/1‑135 (MQ=255)
                                                           gAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTg                                                                                              <  5:340818/135‑1 (MQ=255)
                                                              tcgtcgTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGgtcgtc                                                                             >  1:233649/1‑149 (MQ=255)
                                                                gtcgtTCAGCCCGGGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCga                                                                           <  4:65517/149‑1 (MQ=255)
                                                                gtcgtTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGgtcgtc                                                                             >  8:10167/1‑147 (MQ=255)
                                                                       aGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGATGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCTGTCAGGCCGACTCTGACAGGCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCg                                                                    <  2:213636/149‑1 (MQ=255)
                                                                       aGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCg                                                                    <  6:303395/149‑1 (MQ=255)
                                                                        gCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCgg                                                                   >  2:201925/1‑149 (MQ=255)
                                                                        gCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCgg                                                                   >  5:10523/1‑149 (MQ=255)
                                                                         cgcgcgCATGCCAAAGAAGGGTTTGTCCGATGCATCGGCCGGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCgg                                                                   <  5:106104/146‑1 (MQ=255)
                                                                         cccGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCgg                                                                   >  1:69891/1‑148 (MQ=255)
                                                                         cccGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGt                                                                  <  4:272919/149‑1 (MQ=255)
                                                                          ccGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTa                                                                 <  8:143796/149‑1 (MQ=255)
                                                                          ccGCGCAGGCCAAAGAAGGGTTAGACAGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCAACGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCgg                                                                   >  7:235527/1‑147 (MQ=255)
                                                                             cgcAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTc                                                              <  7:278634/149‑1 (MQ=255)
                                                                             cgcAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTc                                                              <  5:127690/149‑1 (MQ=255)
                                                                              gcAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTcc                                                             <  2:69891/149‑1 (MQ=255)
                                                                                aGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTc                                                           <  8:79895/149‑1 (MQ=255)
                                                                                 ggCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCg                                                          <  4:138920/149‑1 (MQ=255)
                                                                                  gCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCgaga                                                                         >  7:299452/1‑133 (MQ=255)
                                                                                  gCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCgaga                                                                         <  8:299452/133‑1 (MQ=255)
                                                                                    cAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGa                                                         >  2:342728/1‑147 (MQ=255)
                                                                                    cAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGa                                                         <  1:342728/147‑1 (MQ=255)
                                                                                            ggTTTGTCCGAAGCATGGGCCCGGTAGCGGGCCTCAGCCCCGTTTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAg                                                <  8:235527/148‑1 (MQ=255)
                                                                                              tttGTCCGAAGCATCGGCCCGGTAGCGGGCCGCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAgggg                                             <  8:184308/149‑1 (MQ=255)
                                                                                               ttGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGc                                            <  7:244528/149‑1 (MQ=255)
                                                                                                    cGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCt                                        <  6:138752/148‑1 (MQ=255)
                                                                                                    cGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTg                                       >  8:41525/1‑149 (MQ=255)
                                                                                                    cGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTg                                       >  5:339085/1‑149 (MQ=255)
                                                                                                        gCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCt                                   >  1:207986/1‑149 (MQ=255)
                                                                                                          tgaggCCCGCTACCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTcc                                 >  8:235440/4‑149 (MQ=255)
                                                                                                          aTCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTcc                                 <  3:12139/149‑1 (MQ=255)
                                                                                                           tCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTccc                                <  6:170434/149‑1 (MQ=255)
                                                                                                              gCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCccgg                             >  4:207329/1‑149 (MQ=255)
                                                                                                               cccGGTAGCGGGCCTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGGGGGGTCGTCGTGAATGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCccggc                            <  2:329757/149‑1 (MQ=255)
                                                                                                                 gcaactcGGGGCTGAGGCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTgg                                      <  6:303289/131‑1 (MQ=255)
                                                                                                                 gcaactcGGGGCTGAGGCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTgg                                      >  5:303289/7‑137 (MQ=255)
                                                                                                                       cGGGCCTCAGCCCCGAGTTGCAGTCACGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGTGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGctctc                    >  4:160870/1‑149 (MQ=255)
                                                                                                                            cTCAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTc                 >  8:158094/1‑147 (MQ=255)
                                                                                                                              cAGCCCCGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGc             <  6:339085/149‑1 (MQ=255)
                                                                                                                                 ccccGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCggg          >  3:204637/1‑149 (MQ=255)
                                                                                                                                 ccccGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGCACTCCCCGGCCGGCTCTCATCAAGCggg          >  1:359161/1‑149 (MQ=255)
                                                                                                                                  cccGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGc         >  2:292761/1‑149 (MQ=255)
                                                                                                                                  cccGAGTTGCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGc         >  2:287966/1‑149 (MQ=255)
                                                                                                                                          gCAGTCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCcgc  <  2:145830/148‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                               
GCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTTCAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGGTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC  >  NC_002947/3788283‑3788568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑